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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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H3K4me3 and YY1 ChIP-seq of untreated 2102Ep cells

ABSTRACT: We used bs-ATLAS-seq to comprehensively map the genomic location and assess the DNA methylation status of human full-length LINE-1 elements (L1) in the genome of 2102Ep cells (E-MTAB-10895). We also achieved targeted nanopore sequencing to assay DNA methylation over a subset of loci (E-MTAB-12247). To further study the link between L1 DNA methylation and expression, we performed, in the same cell line, RNA-seq (E-MTAB-12246), as well as YY1 and H3K4me3 ChIP-seq (this dataset).

INSTRUMENT(S): NextSeq 500

ORGANISM(S): Homo sapiens

SUBMITTER: Gael Cristofari

PROVIDER: E-MTAB-12249 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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