Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The impact of Vibrio harveyi infection on the intestine of hybrid grouper (Epinephelus fuscoguttatus × Epinephelus lanceolatus)

ABSTRACT: Vibrio harveyi is an important pathogen in aquaculture, which can cause severe intestinal damage and metabolic disorders in fish. The intestinal damage of hybrid grouper caused by Vibrio harveyi was verified through transcriptional analysis.

INSTRUMENT(S): HiSeq X Ten

ORGANISM(S): Epinephelus fuscoguttatus x Epinephelus lanceolatus

SUBMITTER: Zheng Min

PROVIDER: E-MTAB-15691 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

The impact of Vibrio harveyi infection on the liver of hybrid grouper (Epinephelus fuscoguttatus × Epinephelus lanceolatus)

Project description:Vibrio harveyi is an important pathogen in aquaculture, which can cause severe organ damage and metabolic disorders in fish. The organ damage of hybrid grouper caused by Vibrio harveyi was verified through transcriptional analysis.

2025-08-30 | E-MTAB-15492 | biostudies-arrayexpress

Modulation of gut immune-metabolic pathways by oligochitosan in hybrid grouper infected with Vibrio harveyi

Project description:Vibrio harveyi, a significant pathogen in aquaculture, can lead to severe gut damage and metabolic disorders in fish. Verification via Transcriptome Sequencing of the gut damage caused by Vibrio harveyi in Hybrid Groupers and the Alleviating Effect of oligochitosan Feeding.

2025-07-20 | E-MTAB-15327 | biostudies-arrayexpress

Influence of oligochitosan on hepatic immune-metabolic homeostasis in hybrid grouper infected with Vibrio harveyi

Project description:Vibrio harveyi, a significant pathogen in aquaculture, can lead to severe liver damage and metabolic disorders in fish. Verification via Transcriptome Sequencing of the Hepatic Damage Caused by Vibrio harveyi in Hybrid Groupers and the Alleviating Effect of Chitosan Oligosaccharide Feeding.

2026-01-18 | E-MTAB-16424 | biostudies-arrayexpress

Total differential RNA-seq in the marine proteobacterium Vibrio harveyi

Project description:Objectives: determination of transcription start sites in Vibrio harveyi genome and discovery of new transcripts Methods: we performed differential seqencing of total RNA isolated from o.n. control Vibrio harveyi cultures. Sample treatment with Terminator EXonuclease (TEX) allowed differenciation of primary and secondary transcripts, helping in the definition of transcription start sites (TSS) Results: by data-mining RNA-seq data and performing some Northern Blot experiments we were able to detect new putative small-RNAs, along with these results, a more deep analisys of our RNA-seq data will give futher insight into genetic organization of Vibrio harveyi genome to help in its investigation

2018-03-27 | GSE105060 | GEO

dRNA-Seq data for Vibrio campbellii BB120 (ATCC BAA-1116, previously designated as Vibrio harveyi)

Project description:Differential RNA-Seq data for Vibrio campbellii BB120 (ATCC BAA-1116, previously designated as Vibrio harveyi)

2024-07-15 | GSE182898 | GEO

Transcriptome profiling analysis of bacterial challenged Lateolabrax japonicus reveals deep insight into the immune-relevant genes in marine fish (DGE)

Project description:We report the application of Solexa/Illumina's digital gene expression (DGE) sequencing approaches to investigate inactivated Vibrio harveyi--induced transcriptome changes in Lateolabrax japonicas, a non model vertebrate species. Totally 3.44 and 3.22 million raw tags were measured. Then, gene annotation was performed by tags mapping analysis and the 169,950 non-redundant consensus sequences from RNA-seq based transcriptome analysis were used as reference transcript database. Tag mapping indicated that Vibrio harveyi--challenged adult Lateolabrax japonicas express over 70% of all genes represented in transcript databases. Meanwhile, totally 1224 consensus sequences exhibited significant difference after the bacterial challenge, in which 1183 transcripts can be well annotated, while approximately 41 transcripts have low sequence homology to the existing known sequences in public databases, suggesting that they might be putative novel immune-relevant genes in Lateolabrax japonicus closely related to the immunity for bacterial challenge. Our present study would greatly benefit to give deep insight into the immunogenetics in fish species, and clinical application in fish diseases. Examination of differentially expressed transcripts in baterial- and mock challenged fish.

2011-06-12 | E-GEOD-21712 | biostudies-arrayexpress

Comparative transcriptome profiling of Chinese tongue sole in immune response against Vibrio harveyi infection

Project description:Vibrio harveyi is a major bacterial pathogen that can cause fatal vibriosis in Chinese tongue sole (Cynoglossus semilaevis). To comprehend the molecular mechanisms of C. semilaevis host response against V. harveyi infection, we performed transcriptome (RNA-seq) analysis of C. semilaevis from resistant family and susceptible family.

2019-02-26 | GSE126995 | GEO

RNA-sequencing analysis of Takifugu rubripes spleen and gill in response to Vibrio harveyi infection

Project description:In this research, we used RNA-sequencing technology to detect genome-wide differentially expressed genes in spleen and gill of Vibrio harveyi -infected Takifugu rubripes.This high-throughput sequencing could help us to understand new mechanisms of action of V. harveyi induced aquaculture fish disease.

2022-02-23 | GSE155911 | GEO

Profiling transcriptome and proteome of orange-spotted grouper (Epinephelus coioides) after nervous necrosis virus infection

Project description:Grouper is an important commercial maricultural fish, which suffer viral nervous necrosis (VNN) disease at the larval and juvenile stages, but the changes of transcriptomics and proteomics during viral infection remain unknown. In this study, we applied RNA-seq and label-free mass spectrum for the first time to depict the map of transcriptomics and proteomics in non-infected, susceptible-infected and tolerate-infected grouper in larval stage. Further analyses showed that the transcriptome and proteome change dramatically among 3 distinct groups, indicating that different immune response for infected and perststent grouper in larval stage. These valuable transcriptomics and proteomics datasets enable the investigation of molecular mechanism in nervous necrosis (VNN) virus infection, thus helps the further development of molecular breeding and marine fishery

2019-05-15 | PXD012763 | Pride

Analysis of physiological and gene expression changes related to Vibrio harveyi adaptation in the time of global warming

Project description:Vibrio species represent one of the most diverse genera of marine bacteria known for their ubiquitous presence in natural aquatic systems. Several members of this genus including Vibrio harveyi are receiving increasing attention lately because they are becoming a source of health problems, especially for some marine organisms widely used in sea food industry. To learn about adaptation changes triggered by V. harveyi during its long-term persistence at elevated temperatures, we studied adaptation of this marine bacterium in sea water microcosms at 30 oC that closely mimicks the upper limits of sea surface temperatures recorded around the globe.

2019-02-05 | GSE113564 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data