Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - mRNAs

ABSTRACT: The aim of this study was to characterize different adipose tissue depots in rainbow trout (Oncorhynchus mykiss) through the analysis of mRNA and miRNA expression profiles. Mature adipocytes were isolated from visceral (VAT), subcutaneous (SAT), and intramuscular (IMAT) adipose tissues, and RNA sequencing (RNA-seq) was performed. Data were curated, quality-checked, and filtered prior to downstream analyses. This dataset contains the FASTQ files generated in the study. The results will contribute to a better understanding of the molecular differences and similarities among adipose depots in fish reared under standard aquaculture conditions, providing a foundation for improving adiposity control, animal health, fillet yield, and overall product quality.

INSTRUMENT(S): not applicable, Illumina NovaSeq 6000

ORGANISM(S): Oncorhynchus mykiss

SUBMITTER: Enrique Rosell Moll

PROVIDER: E-MTAB-16058 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - miRNAs

Project description:The aim of this study was to characterize different adipose tissue depots in rainbow trout (Oncorhynchus mykiss) through the analysis of mRNA and miRNA expression profiles. Mature adipocytes were isolated from visceral (VAT), subcutaneous (SAT), and intramuscular (IMAT) adipose tissues, and RNA sequencing (RNA-seq) was performed. Data were curated, quality-checked, and filtered prior to downstream analyses. This dataset contains the FASTQ files generated in the study. The results will contribute to a better understanding of the molecular differences and similarities among adipose depots in fish reared under standard aquaculture conditions, providing a foundation for improving adiposity control, animal health, fillet yield, and overall product quality.

2026-01-13 | GSE315484 | GEO

Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - mRNAs

2026-01-13 | GSE315483 | GEO

Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - mRNAs

Project description:Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - mRNAs

| PRJNA1397220 | ENA

Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - mRNAs

Project description:Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - mRNAs

| PRJEB103951 | ENA

Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - miRNAs

Project description:Rainbow trout adipose tissue depots (VAT, SAT, IMAT) - miRNAs

| PRJNA1397221 | ENA

Deep proteome profiling of white adipose tissue reveals marked conservation and distinct features between different anatomical depots

Project description:The two major mammalian adipose tissue depots are subcutaneous adipose tissue (SAT), which is associated with metabolic protection, and abdominal/visceral (VAT), which contributes to metabolic disease. To investigate the molecular underpinnings of these differences, we conducted a comprehensive analysis of the proteomes of adipocytes and whole tissue from these different depots across two different diets in male C57Bl/6J mice.

2023-02-13 | PXD039523 | Pride

Effects of PCB 52 Exposure Via Sub-Acute Nose-Only Inhalation on Gene Expression in Fat Depots of Adolescent Rats

Project description:Polychlorinated biphenyls (PCBs) are persistent environmental toxicants that pose a variety of health risks in humans. PCB 52 has been found in the indoor air of schools where adolescent students and staff are being actively exposed. This study examined the three different fat depots, namely, brown adipose tissue (BAT), subcutaneous adipose tissue (SAT), and visceral adipose tissue (VAT), of adolescent Sprague-Dawley rats after sub-acute exposure to PCB 52 via nose-only inhalation. Rats were exposed for 4 hours daily for 28 consecutive days. RNA extracted from both male and female fat depots were submitted for RNA sequencing to compare the effects of PCB 52 on the expression of genes in the fat depots.

2024-03-04 | GSE259369 | GEO

Expression data from multiple mouse adipose depots

Project description:Comparing gene expression profiles of murine subcutaneous vs. visceral adipose tissue. Gene expression was analyzed in two subcutaneous depots (inguinal and axillary) and two visceral depots (epididymal and mesenteric) from male C57Bl/6 mice.

2014-01-16 | GSE53307 | GEO

Comparative miRNA transcriptome profiling across six adipose depots in buffaloes

Project description:To profile miRNA expression variations across six adipose depots, a total of 36 adipose samples underwent high-throughput small RNA sequencing.

2025-07-02 | GSE293466 | GEO

Comparative transcriptome analysis between six adipose depots in buffaloes

Project description:To characterize the transcriptome differences between different adipose depots, a total of 36 adipose samples were used for high-throughput sequencing. At last, about 23,000 transcripts were identified.

2023-05-17 | GSE208541 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data