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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Single-cell RNA sequencing of murine lung in steady state, after IL-33 treatment or HDM treatment

ABSTRACT: Single cell RNA sequencing of the lung in steady state, after 1 or 3 doses of IL-33 or after HDM treatment Exp1: steady state lung cells (both CD45- as CD45+) from 4 untreated mice. Cells from distinct replicates are labeled with unique HTO barcodes. Exp2: lung cells (both CD45- as CD45+) from 2 mice (PBS intratracheal treatment), 4 mice (1xIL33 intratracheal treatment) and 4 mice (3 x IL33 intratracheal treatment). Cells from distinct replicates are labeled with unique HTO barcodes. Exp3: lung, bone marrow and blood cells (CD45+ CD3- CD19-) from 3 mice (House dust mite intratracheal (HDM) treatment and 14 days later PBS intranasal treatment on 4 consecutive days) and 3 mice (HDM treatment and 14 days later HDM intranasal treatment on 4 consecutive days). Mice were pooled and different organs were labeled with unique HTO barcodes. In all cases, collection of the samples was performed 24 hours after the last treatment. More experimental details can be found in the STAR methods section of the publication.

INSTRUMENT(S): 10X Chromium, FACS BD Aria II & III, Illumina NovaSeq 6000, Cellranger

ORGANISM(S): Mus musculus

SUBMITTER: Stijn Verwaerde

PROVIDER: E-MTAB-16099 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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