RNA-seq read alignment evaluation

ABSTRACT: To assess the performance of read mapping software for RNA-seq, 26 spliced alignment protocols based on 11 programs and pipelines (BAGET, GEM, GSNAP, GSTRUCT, MapSplice, PALMapper, PASS, ReadsMap, SMALT, STAR and TopHat) were applied to four human and mouse transcriptome data sets.

INSTRUMENT(S): Illumina Genome Analyzer IIx

ORGANISM(S): Homo sapiens

SUBMITTER: Paul Bertone 

PROVIDER: E-MTAB-1728 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress