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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Coprinopsis cinerea transcriptome in response to hyphal damage, nematode predation or bacterial co-cultivation

ABSTRACT: We have recently shown that the coprophilous model mushroom Coprinopsis cinerea transcribes a broad array of genes encoding defense proteins in the vegetative mycelium and fruiting bodies that target bacterial competitors and animal predators challenging the respective tissues of this fungus. In addition, we have demonstrated in previous work that two nematotoxic defense proteins from Coprinopsis, CGL1 and CGL2, were induced in vegetative mycelium challenged with the predatory nematode Aphelenchus avenae; however, the specificity and broadness of this response remained unclear. In order to resolve these issues, we sequenced the poly(A)-positive transcriptome of vegetative mycelium of C. cinerea confronted with nematode predation, hyphal mechanical damage or bacterial co-culture.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Coprinopsis cinerea

SUBMITTER: David Plaza

PROVIDER: E-MTAB-2763 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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