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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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RNA-seq of mouse Lgr5+ intestinal stem cells and progenitors following Lkb1 deletion against controls

ABSTRACT: Perturbed intestinal epithelial homeostasis demonstrated as decreased Lgr5+ intestinal stem cells (Lgr5 ISCs) and increased secretory lineages were observed in our study where Lkb1 was specfically deleted in Lgr5 ISCs using Lgr5-EGFP-creERT2 (Tamoxifen) deletor. To gain mechanistic insight how Lkb1 maintains intestinal epithelial stem cell homeostasis, Lkb1 deficient ISCs (Lgr5-high cells) and progenitors (Lgr5-low cells) are isolated by flow cytometry and profiled by RNA sequencing to compare with controls (Lkb1 wild type ISCs and progenitors).

INSTRUMENT(S): NextSeq 500

ORGANISM(S): Mus musculus

SUBMITTER: Sushil Tripathi

PROVIDER: E-MTAB-6501 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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