Dataset Information

Species of Peperomia (Piperaceae) from the Sana River Valley, Peru.

ABSTRACT: The Saña River Valley in Northern Peru is unusual for the western slopes of the Peruvian Andes because of its nearly year-round regime of precipitation instead of marked seasonal dry winters. This results in unexpected plant diversity. We surveyed the species of Peperomia (Piperaceae), occurring in this valley from 300 to 3000 m elevation, based on the study of specimens from ten herbaria and field collections, resulting in a total of 81 accessions, of which 48 were made by the authors. We found 16 different taxa: Peperomiacacaophila, from Ecuador, is reported for the first time in Peru; P.cymbifolia, P.dolabriformis and P.emarginulata are reported for the first time for the Saña River Valley; other widely distributed species like P.fraseri, P.galioides, P.haematolepis, P.hispidula, P.inaequalifolia, P.microphylla, and P.rotundata were also found. Five species new to science are described: P.pilocarpa, P.riosaniensis, close to P.palmiformis from Amazonas; P.sagasteguii, related to P.trinervis, P.symmankii, close to P.ricardofernandezii from Piura, and P.vivipara, related to P.alata. A key to the species of Peperomia from the Saña River Valley, based on vegetative characters, is provided.

SUBMITTER: Pino Infante GE

PROVIDER: S-EPMC10209506 | biostudies-literature | 2023

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Species of <i>Peperomia</i> (Piperaceae) from the Saña River Valley, Peru.

Pino Infante Guillermo Eloy GE Samain Marie-Stéphanie MS Albán Castillo Joaquina Adelaida JA Alomía Collazos Luis Enrique Aarón LEA

PhytoKeys 20230419

The Saña River Valley in Northern Peru is unusual for the western slopes of the Peruvian Andes because of its nearly year-round regime of precipitation instead of marked seasonal dry winters. This results in unexpected plant diversity. We surveyed the species of <i>Peperomia</i> (Piperaceae), occurring in this valley from 300 to 3000 m elevation, based on the study of specimens from ten herbaria and field collections, resulting in a total of 81 accessions, of which 48 were made by the authors. W ...[more]

PMID: 37252325

Similar Datasets

Project description:BackgroundThe rapidly increasing number of available plant genomes opens up almost unlimited prospects for biology in general and molecular phylogenetics in particular. A recent study took advantage of this data and identified a set of nuclear genes that occur in single copy in multiple sequenced angiosperms. The present study is the first to apply genomic sequence of one of these low copy genes, agt1, as a phylogenetic marker for species-level phylogenetics. Its utility is compared to the performance of several coding and non-coding chloroplast loci that have been suggested as most applicable for this taxonomic level. As a model group, we chose Tildenia, a subgenus of Peperomia (Piperaceae), one of the largest plant genera. Relationships are particularly difficult to resolve within these species rich groups due to low levels of polymorphisms and fast or recent radiation. Therefore, Tildenia is a perfect test case for applying new phylogenetic tools.ResultsWe show that the nuclear marker agt1, and in particular the agt1 introns, provide a significantly increased phylogenetic signal compared to chloroplast markers commonly used for low level phylogenetics. 25% of aligned characters from agt1 intron sequence are parsimony informative. In comparison, the introns and spacer of several common chloroplast markers (trnK intron, trnK-psbA spacer, ndhF-rpl32 spacer, rpl32-trnL spacer, psbA-trnH spacer) provide less than 10% parsimony informative characters. The agt1 dataset provides a deeper resolution than the chloroplast markers in Tildenia.ConclusionsSingle (or very low) copy nuclear genes are of immense value in plant phylogenetics. Compared to other nuclear genes that are members of gene families of all sizes, lab effort, such as cloning, can be kept to a minimum. They also provide regions with different phylogenetic content deriving from coding and non-coding parts of different length. Thus, they can be applied to a wide range of taxonomic levels from family down to population level. As more plant genomes are sequenced, we will obtain increasingly precise information about which genes return to single copy most rapidly following gene duplication and may be most useful across a wide range of plant groups.

Project description:BackgroundUrogenital schistosomiasis, caused by infection with Schistosoma haematobium, is endemic in Niger but complicated by the presence of Schistosoma bovis, Schistosoma curassoni and S. haematobium group hybrids along with various Bulinus snail intermediate host species. Establishing the schistosomes and snails involved in transmission aids disease surveillance whilst providing insights into snail-schistosome interactions/compatibilities and biology.MethodsInfected Bulinus spp. were collected from 16 villages north and south of the Niamey region, Niger, between 2011 and 2015. From each Bulinus spp., 20-52 cercariae shed were analysed using microsatellite markers and a subset identified using the mitochondrial (mt) cox1 and nuclear ITS1 + 2 and 18S DNA regions. Infected Bulinus spp. were identified using both morphological and molecular analysis (partial mt cox1 region).ResultsA total of 87 infected Bulinus from 24 sites were found, 29 were molecularly confirmed as B. truncatus, three as B. forskalii and four as B. globosus. The remaining samples were morphologically identified as B. truncatus (n = 49) and B. forskalii (n = 2). The microsatellite analysis of 1124 cercariae revealed 186 cercarial multilocus genotypes (MLGs). Identical cercarial genotypes were frequently (60%) identified from the same snail (clonal populations from a single miracidia); however, several (40%) of the snails had cercariae of different genotypes (2-10 MLG's) indicating multiple miracidial infections. Fifty-seven of the B. truncatus and all of the B. forskalii and B. globosus were shedding the Bovid schistosome S. bovis. The other B. truncatus were shedding the human schistosomes, S. haematobium (n = 6) and the S. haematobium group hybrids (n = 13). Two B. truncatus had co-infections with S. haematobium and S. haematobium group hybrids whilst no co-infections with S. bovis were observed.ConclusionsThis study has advanced our understanding of human and bovid schistosomiasis transmission in the Niger River Valley region. Human Schistosoma species/forms (S. haematobium and S. haematobium hybrids) were found transmitted only in five villages whereas those causing veterinary schistosomiasis (S. bovis), were found in most villages. Bulinus truncatus was most abundant, transmitting all Schistosoma species, while the less abundant B. forskalii and B. globosus, only transmitted S. bovis. Our data suggest that species-specific biological traits may exist in relation to co-infections, snail-schistosome compatibility and intramolluscan schistosome development.

Dataset Information

Species of Peperomia (Piperaceae) from the Sana River Valley, Peru.

Publications

Species of <i>Peperomia</i> (Piperaceae) from the Saña River Valley, Peru.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets

Dataset Information

Species of Peperomia (Piperaceae) from the Sana River Valley, Peru.

Publications

﻿Species of <i>Peperomia</i> (Piperaceae) from the Saña River Valley, Peru.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets

Species of <i>Peperomia</i> (Piperaceae) from the Saña River Valley, Peru.