Ontology highlight
ABSTRACT:
SUBMITTER: Han R
PROVIDER: S-EPMC10552309 | biostudies-literature | 2023 Oct
REPOSITORIES: biostudies-literature
Han Renmin R Qi Junhai J Xue Yang Y Sun Xiujuan X Zhang Fa F Gao Xin X Li Guojun G
Genome biology 20231005 1
DNA barcodes enable Oxford Nanopore sequencing to sequence multiple barcoded DNA samples on a single flow cell. DNA sequences with the same barcode need to be grouped together through demultiplexing. As the number of samples increases, accurate demultiplexing becomes difficult. We introduce HycDemux, which incorporates a GPU-parallelized hybrid clustering algorithm that uses nanopore signals and DNA sequences for accurate data clustering, alongside a voting-based module to finalize the demultipl ...[more]