Spatially Exploring RNA Biology in Archival Formalin-Fixed Paraffin-Embedded Tissues.

ABSTRACT: Spatial transcriptomics has emerged as a powerful tool for dissecting spatial cellular heterogeneity but as of today is largely limited to gene expression analysis. Yet, the life of RNA molecules is multifaceted and dynamic, requiring spatial profiling of different RNA species throughout the life cycle to delve into the intricate RNA biology in complex tissues. Human disease-relevant tissues are commonly preserved as formalin-fixed and paraffin-embedded (FFPE) blocks, representing an important resource for human tissue specimens. The capability to spatially explore RNA biology in FFPE tissues holds transformative potential for human biology research and clinical histopathology. Here, we present Patho-DBiT combining in situ polyadenylation and deterministic barcoding for spatial full

SUBMITTER: Bai Z 

PROVIDER: S-EPMC10871202 | biostudies-literature | 2024 Feb

REPOSITORIES: biostudies-literature