The Seed Germination Test as a Valuable Tool for the Short-Term Phytotoxicity Screening of Water-Soluble Polyamidoamines
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PROVIDER: S-EPMC11207469 | biostudies-literature | 2024 Jun
REPOSITORIES: biostudies-literature
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Project description:We developed a rapid-test to screen for effects of biochar on seed germina- tion and soils. Crop seeds were placed in containers and covered with 15 g of soil with 1% biochar by weight. Two agricultural soils from South Carolina USA were used. Eighteen biochars were produced from six primary feedstocks [pine chips (PC), poultry litter (PL), swine solids (SS), switchgrass (SG); and two blends of PC and PL, 50% PC/50% PL (55), and 80% PC/20% PL (82)]. Each feedstock was pyrolyzed at 350, 500 and 700°C. There were few biochar effects on seed germination. Shoot dry weight was increased for carrot, cucumber, lettuce, oat, and tomato; primarily with biochars containing PL. Soil pH, electrical conductivity and extractable phosphorus primarily increased with PL, SS, 55, and 82 treatments for both soil types and across species. This method can be an early indicator of biochar effects on seed germination and soil health.
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Project description:Key messagePTR2 in Arabidopsis thaliana is negatively regulated by ABI4 and plays a key role in water uptake by seeds, ensuring that imbibed seeds proceed to germination. Peptide transporters (PTRs) transport nitrogen-containing substrates in a proton-dependent manner. Among the six PTRs in Arabidopsis thaliana, the physiological role of the tonoplast-localized, seed embryo abundant PTR2 is unknown. In the present study, a molecular physiological analysis of PTR2 was conducted using ptr2 mutants and PTR2CO complementation lines. Compared with the wild type, the ptr2 mutant showed ca. 6 h delay in testa rupture and consequently endosperm rupture because of 17% lower water content and 10% higher free abscisic acid (ABA) content. Constitutive overexpression of the PTR2 gene under the control of the Cauliflower mosaic virus (CaMV) 35S promoter in ptr2 mutants rescued the mutant phenotypes. After cold stratification, a transient increase in ABA INSENSITIVE4 (ABI4) transcript levels during induction of testa rupture was followed by a similar increase in PTR2 transcript levels, which peaked prior to endosperm rupture. The PTR2 promoter region containing multiple CCAC motifs was recognized by ABI4 in electrophoretic mobility shift assays, and PTR2 expression was repressed by 67% in ABI4 overexpression lines compared with the wild type, suggesting that PTR2 is an immediate downstream target of ABI4. Taken together, the results suggest that ABI4-dependent temporal regulation of PTR2 expression may influence water status during seed germination to promote the post-germinative growth of imbibed seeds.
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Project description:Seed dormancy allows seeds to overcome periods that are unfavourable for seedling established and is therefore important for plant ecology and agriculture. Several processes are known to be involved in the induction of dormancy and in the switch from the dormant to the germinating state. The role of plant hormones, the different tissues and genes involved, including newly identified genes in dormancy and germination are described in this chapter, as well as the use transcriptome, proteome and metabolome analyses to study these mechanistically not well understood processes.
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Project description:Phenylphenalenones, metabolites found in Schiekia timida (Haemodoraceae), are a class of specialized metabolites with many biological activities, being phytoalexins in banana plants. In the constant search to solve the problem of glyphosate and to avoid resistance to commercial herbicides, this work aimed to investigate the phytotoxic effect of the methanolic extract of S. timida seeds. The chemical composition of the seed extract was directly investigated by NMR and UPLC-QToF MS and the pre- and post-emergence phytotoxic effect on a eudicotyledonous model (Lactuca sativa) and a monocotyledonous model (Allium cepa) was evaluated through germination and seedling growth tests. Three concentrations of the extract (0.25, 0.50, and 1.00 mg/mL) were prepared, and four replicates for each of them were analyzed. Three major phenylphenalenones were identified by NMR spectroscopy: 4-hydroxy-anigorufone, methoxyanigorufone, and anigorufone, two of those reported for the first time in S. timida. The presence of seven other phenylphenalenones was suggested by the LC-MS analyses. The phenylphenalenone mixture did not affect the germination rate, but impaired radicle and hypocotyl growth on both models. The effect in the monocotyledonous model was statistically similar to glyphosate in the lowest concentration (0.25 mg/mL). Therefore, although more research on this topic is required to probe this first report, this investigation suggests for the first time that phenylphenalenone compounds may be post-emergence herbicides.
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Project description:BackgroundTepary bean (Phaseolus acutifolius A. Gray) is one of the five species domesticated from the genus Phaseolus with genetic resistance to biotic and abiotic stress. To understand the mechanisms underlying drought responses in seed storage proteins germinated on water and polyethylene glycol (PEG-6000) at -0.49 MPa, we used a proteomics approach to identify potential molecular target proteins associated with the low water potential stress response.MethodsStorage proteins from cotyledons of Tepary bean seeds germinated at 24, 48 and 72 h on water and PEG-6000 at -0.49 MPa were analyzed by one-dimensional electrophoresis (DE) with 2-DE analysis and shotgun mass spectrometry. Using computational database searching and bioinformatics analyses, we performed Gene Ontology (GO) and protein interactome (functional protein association network) String analyses.ResultsComparative analysis showed that the effect of PEG-6000 on root growth was parallel to that on germination. Based on the SDS‒PAGE protein banding patterns and 2-DE analysis, ten differentially abundant seed storage proteins showed changes in storage proteins, principally in the phaseolin and lectin fractions. We found many proteins that are recognized as drought stress-responsive proteins, and several of them are predicted to be intrinsically related to abiotic stress. The shotgun analysis searched against UniProt's legume database, and Gene Ontology (GO) analysis indicated that most of the seed proteins were cytosolic, with catalytic activity and associated with carbohydrate metabolism. The protein‒protein interaction networks from functional enrichment analysis showed that phytohemagglutinin interacts with proteins associated with the degradation of storage proteins in the cotyledons of common bean during germination.ConclusionThese findings suggest that Tepary bean seed proteins provide valuable information with the potential to be used in genetic improvement and are part of the drought stress response, making our approach a potentially useful strategy for discovering novel drought-responsive proteins in other plant models.
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Project description:Allium tenuissimum L. is a widely distributed perennial herbaceous species in temperate and desert steppes. Relative to other wild Allium species, it produces unique sweet flavors, more biomass in arid and cold environments, and has generated greater interest for crop production. Successful crop establishment, however, will depend on rapid and uniform seed germination. Our study aimed to characterize seed germination of A. tenuissimum under various temperature regimes (11, 15, 20, 24 and 28 °C) and water potential levels (0, -0.2, -0.4 and -0.6 MPa), and model germination by hydrotime (HT) and hydrothermal time (HTT) analysis. Final germination percentage (FGP) increased within the range of 11 to 20 °C, yet it declined within the range of 24 to 28 °C and generally decreased as water potential became more negative within each temperature setting. Maximum FGP was observed at 20 °C at all water potential settings and ranged from 55.0 ± 5.3 to 94.8 ± 1.4%. According to HT and HTT models, the base (T b) and optimum temperatures (T o) for seed germination were 7.0 and 20.5 °C, respectively. In addition, base water potential for the fraction of germination within the seed lot (Ψb(g)) shifted to 0 MPa as temperature increased from T b to ceiling temperature (T c). For obtaining 50 % seed germination, Ψb(50) and T c(50) were estimated to be -0.67 MPa and 27.2 °C, respectively. These values for T b and Ψb(50) suggest seed germination of A. tenuissimum is both cold and drought tolerant and suitable for production in semi-arid regions. Our characterization of the ideal sowing conditions for A. tenuissimum, i.e., 20.5 °C and soil water potential less negative than -0.67 MPa offers information to forecast suitable settings to enhance crop production.
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Project description:Seed is a condensed form of plant. Under suitable environmental conditions, it can resume the metabolic activity from physiological quiescent status, and mobilize the reserves, biosynthesize new proteins, regenerate organelles, and cell membrane, eventually protrude the radicle and enter into seedling establishment. So far, how these activities are regulated in a coordinated and sequential manner is largely unknown. With the availability of more and more genome sequence information and the development of mass spectrometry (MS) technology, proteomics has been widely applied in analyzing the mechanisms of different biological processes, and proved to be very powerful. Regulation of rice seed germination is critical for rice cultivation. In recent years, a lot of proteomic studies have been conducted in exploring the gene expression regulation, reserves mobilization and metabolisms reactivation, which brings us new insights on the mechanisms of metabolism regulation during this process. Nevertheless, it also invokes a lot of questions. In this mini-review, we summarized the progress in the proteomic studies of rice seed germination. The current challenges and future perspectives were also discussed, which might be helpful for the following studies.
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Project description:BackgroundEfficient seed germination is a crucial task at the beginning of crop cultivation. Although boundaries of environmental parameters that should be maintained are well studied, fine-tuning can significantly improve the efficiency, which is infeasible to be done manually due to the high dimensionality of the parameter space.ResultsTraditionally seed germination is performed in climatic chambers with controlled environmental conditions. In this study, we perform a set of multiple-day seed germination experiments in the controllable environment. We use up to three climatic chambers to adjust humidity, temperature, water supply and apply machine learning algorithm called Bayesian optimization (BO) to find the parameters that improve seed germination. Experimental results show that our approach allows to increase the germination efficiency for different types of seeds compared to the initial expert knowledge-based guess.ConclusionOur experiments demonstrated that BO could help to identify the values of the controllable parameters that increase seed germination efficiency. The proposed methodology is model-free, and we argue that it may be useful for a variety of optimization problems in precision agriculture. Further experimental studies are required to investigate the effectiveness of our approach for different seed cultures and controlled parameters.
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Project description:Effect of ultrasonic power on the structure and functional properties of water-soluble protein extracted from defatted Moringa oleifera seed were explored. The results showed that ultrasonic treatment could reduce β-sheet and β-turn content of water-soluble protein from Moringa oleifera seed (MOWP) and increase the content of random coil and α-helix. Changes in intrinsic fluorescence spectra, surface hydrophobicity (H0) and thermal behaviors indicated that ultrasonic had significant effect on the tertiary structure of MOWP. The results of SEM and SDS-PAGE showed that the MOWP was aggregated but not significantly degraded by ultrasound. The solubility, foaming properties and emulsifying properties of MOWP increased firstly and then decreased with the increase of ultrasonic power. Ultrasonic treatment altered the functional properties of MOWP, which might be attributed to the exposure of hydrophilic group and the change of and secondary and tertiary structure.
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Project description:This series analyses germinating Arabidopsis seeds with both temporal and spatial detail, revealing two transcriptional phases that are separated with respect to testa rupture. Performed as part of the ERA-NET Plant Genomics grant vSEED.
2013-07-16 | GSE41212 | GEO