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Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers.


ABSTRACT: How the KRAS oncogene drives cancer growth remains poorly understood. Therefore, we established a systemwide portrait of KRAS- and extracellular signal-regulated kinase (ERK)-dependent gene transcription in KRAS-mutant cancer to delineate the molecular mechanisms of growth and of inhibitor resistance. Unexpectedly, our KRAS-dependent gene signature diverges substantially from the frequently cited Hallmark KRAS signaling gene signature, is driven predominantly through the ERK mitogen-activated protein kinase (MAPK) cascade, and accurately reflects KRAS- and ERK-regulated gene transcription in KRAS-mutant cancer patients. Integration with our ERK-regulated phospho- and total proteome highlights ERK deregulation of the anaphase promoting complex/cyclosome (APC/C) and other components of the cell cycle machinery as key processes that drive pancreatic ductal adenocarcinoma (PDAC) growth. Our findings elucidate mechanistically the critical role of ERK in driving KRAS-mutant tumor growth and in resistance to KRAS-ERK MAPK targeted therapies.

SUBMITTER: Klomp JA 

PROVIDER: S-EPMC11301402 | biostudies-literature | 2024 Jun

REPOSITORIES: biostudies-literature

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Defining the KRAS- and ERK-dependent transcriptome in KRAS-mutant cancers.

Klomp Jeffrey A JA   Klomp Jennifer E JE   Stalnecker Clint A CA   Bryant Kirsten L KL   Edwards A Cole AC   Drizyte-Miller Kristina K   Hibshman Priya S PS   Diehl J Nathaniel JN   Lee Ye S YS   Morales Alexis J AJ   Taylor Khalilah E KE   Peng Sen S   Tran Nhan L NL   Herring Laura E LE   Prevatte Alex W AW   Barker Natalie K NK   Hover Laura D LD   Hallin Jill J   Sorokin Alexey A   Kanikarla Preeti Marie PM   Chowdhury Saikat S   Coker Oluwadara O   Lee Hey Min HM   Goodwin Craig M CM   Gautam Prson P   Olson Peter P   Christensen James G JG   Shen John P JP   Kopetz Scott S   Graves Lee M LM   Lim Kian-Huat KH   Wang-Gillam Andrea A   Wennerberg Krister K   Cox Adrienne D AD   Der Channing J CJ  

Science (New York, N.Y.) 20240607 6700


How the <i>KRAS</i> oncogene drives cancer growth remains poorly understood. Therefore, we established a systemwide portrait of KRAS- and extracellular signal-regulated kinase (ERK)-dependent gene transcription in KRAS-mutant cancer to delineate the molecular mechanisms of growth and of inhibitor resistance. Unexpectedly, our KRAS-dependent gene signature diverges substantially from the frequently cited Hallmark KRAS signaling gene signature, is driven predominantly through the ERK mitogen-activ  ...[more]

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