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Unravelling global genome organization by 3C-seq.


ABSTRACT: Eukaryotic genomes exist in the cell nucleus as an elaborate three-dimensional structure which reflects various nuclear processes such as transcription, DNA replication and repair. Next-generation sequencing (NGS) combined with chromosome conformation capture (3C), referred to as 3C-seq in this article, has recently been applied to the yeast and human genomes, revealing genome-wide views of functional associations among genes and their regulatory elements. Here, we compare the latest genomic approaches such as 3C-seq and ChIA-PET, and provide a condensed overview of how eukaryotic genomes are functionally organized in the nucleus.

SUBMITTER: Tanizawa H 

PROVIDER: S-EPMC3362197 | biostudies-literature | 2012 Apr

REPOSITORIES: biostudies-literature

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Unravelling global genome organization by 3C-seq.

Tanizawa Hideki H   Noma Ken-ichi K  

Seminars in cell & developmental biology 20111118 2


Eukaryotic genomes exist in the cell nucleus as an elaborate three-dimensional structure which reflects various nuclear processes such as transcription, DNA replication and repair. Next-generation sequencing (NGS) combined with chromosome conformation capture (3C), referred to as 3C-seq in this article, has recently been applied to the yeast and human genomes, revealing genome-wide views of functional associations among genes and their regulatory elements. Here, we compare the latest genomic app  ...[more]

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