Correction: Evidence for the Involvement of Loosely Bound Plastosemiquinones in Superoxide Anion Radical Production in Photosystem II.
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ABSTRACT:
SUBMITTER: PLOS ONE Staff
PROVIDER: S-EPMC4456419 | biostudies-literature | 2015
REPOSITORIES: biostudies-literature
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Correction: Evidence for the Involvement of Loosely Bound Plastosemiquinones in Superoxide Anion Radical Production in Photosystem II.
PloS one 20150604 6
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Project description:Global Gene Expression Analysis Reveals Differences in Cellular Responses to Hydroxyl- and Superoxide-induced Oxidative Stress in Caco-2 Cells. Reactive oxygen species-induced oxidative stress in the colon is involved in inflammatory bowel diseases and is suggested to be associated with colorectal cancer risk. However, our insight in molecular responses to different oxygen radicals is still fragmentary. Therefore, we studied global gene expression by an extensive time serie (0.08, 0.25, 0.5, 1, 2, 4, 8, 16, or 24 hours ) analyses in human colon cancer (Caco-2) cells after exposure to H2O2 or menadione, leading to the formation of HO. or O2.- radicals respectively. Next to gene expression, induction of pathways and correlations with related phenotypic markers (oxidative DNA damage, cell cycle arrest) was investigated. Gene expression analysis resulted in 1404 differentially expressed genes upon H2O2 challenge and 979 genes after menadione treatment. Time-dependent co-regulated genes immediately showed a pulse-like response to HO. formation while the O2.--induced expression is not restored over 24 hours. Pathway analyses demonstrated that the difference in the modulation of gene expression is also reflected in regulation of pathways by HO. and O2.-: H2O2 immediately influences pathways involved in the immune function, while menadione constantly regulated cell cycle-related pathways. Altogether, this study offers a novel and detailed insight in differential time-dependent oxidative stress response, but most importantly, shows that effects of HO. and O2.- can also be discriminated regarding their modulation of particular carcinogenesis-related mechanisms. Keywords: Comparison of genome-wide gene expression between different time points for H2O2 and menadione.
2010-01-12 | GSE15327 | GEO
Project description:The understanding of the mechanism, oxidant(s) involved and how and what protein radicals are produced during the reaction of wild-type SOD1 (Cu,Zn-superoxide dismutase) with H2O2 and their fate is incomplete, but a better understanding of the role of this reaction is needed. We have used immuno-spin trapping and MS analysis to study the protein oxidations driven by human (h) and bovine (b) SOD1 when reacting with H2O2 using HSA (human serum albumin) and mBH (mouse brain homogenate) as target models. In order to gain mechanistic information about this reaction, we considered both copper- and CO3(*-) (carbonate radical anion)-initiated protein oxidation. We chose experimental conditions that clearly separated SOD1-driven oxidation via CO(*-) from that initiated by copper released from the SOD1 active site. In the absence of (bi)carbonate, site-specific radical-mediated fragmentation is produced by SOD1 active-site copper. In the presence of (bi)carbonate and DTPA (diethylenetriaminepenta-acetic acid) (to suppress copper chemistry), CO(*-) produced distinct radical sites in both SOD1 and HSA, which caused protein aggregation without causing protein fragmentation. The CO(*-) produced by the reaction of hSOD1 with H2O2 also produced distinctive DMPO (5,5-dimethylpyrroline-N-oxide) nitrone adduct-positive protein bands in the mBH. Finally, we propose a biochemical mechanism to explain CO(*-) production from CO2, enhanced protein radical formation and protection by (bi)carbonate against H2O2-induced fragmentation of the SOD1 active site. Our present study is important for establishing experimental conditions for studying the molecular mechanism and targets of oxidation during the reverse reaction of SOD1 with H2O2; these results are the first step in analysing the critical targets of SOD1-driven oxidation during pathological processes such as neuroinflammation.
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Project description:Water is a primary source of electrons and protons for photosynthetic organisms. For the production of hydrogen through the process of mimicking natural photosynthesis, photosystem II (PSII)-based hybrid photosynthetic systems have been created, both with and without an external voltage source. In the past 30 years, various PSII immobilization techniques have been proposed, and redox polymers have been created for charge transfer from PSII. This review considers the main components of photosynthetic systems, methods for evaluating efficiency, implemented systems and the ways to improve them. Recently, low-overpotential catalysts have emerged that do not contain precious metals, which could ultimately replace Pt and Ir catalysts and make water electrolysis cheaper. However, PSII competes with semiconductor analogues that are less efficient but more stable. Methods originally created for sensors also allow for the use of PSII as a component of a photoanode. To date, charge transfer from PSII remains a bottleneck for such systems. Novel data about action mechanism of artificial electron acceptors in PSII could develop redox polymers to level out mass transport limitations. Hydrogen-producing systems based on PSII have allowed to work out processes in artificial photosynthesis, investigate its features and limitations.Supplementary informationThe online version contains supplementary material available at 10.1007/s12551-023-01139-5.
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Project description:Sulphoxidation of compounds capable of undergoing biological sulphoxidation has been demonstrated in a model system (NADH-phenazine methosulphate-O(2)), known to generate superoxide anions (O(2) (-)). Addition of superoxide dismutase to this system results in complete inhibition, suggesting the involvement of O(2) (-) in sulphoxidation.
| S-EPMC1166089 | biostudies-other
Project description:Two symmetrically positioned redox active tyrosine residues are present in the photosystem II (PSII) reaction center. One of them, TyrZ, is oxidized in the ns-micros time scale by P680+ and reduced rapidly (micros to ms) by electrons from the Mn complex. The other one, TyrD, is stable in its oxidized form and seems to play no direct role in enzyme function. Here, we have studied electron donation from these tyrosines to the chlorophyll cation (P680+) in Mn-depleted PSII from plants and cyanobacteria. In particular, a mutant lacking TyrZ was used to investigate electron donation from TyrD. By using EPR and time-resolved absorption spectroscopy, we show that reduced TyrD is capable of donating an electron to P680+ with t1/2 approximately equal to 190 ns at pH 8.5 in approximately half of the centers. This rate is approximately 10(5) times faster than was previously thought and similar to the TyrZ donation rate in Mn-depleted wild-type PSII (pH 8.5). Some earlier arguments put forward to rationalize the supposedly slow electron donation from TyrD (compared with that from TyrZ) can be reassessed. At pH 6.5, TyrZ (t1/2 = 2-10 micros) donates much faster to P680+ than does TyrD (t1/2 > 150 micros). These different rates may reflect the different fates of the proton released from the respective tyrosines upon oxidation. The rapid rate of electron donation from TyrD requires at least partial localization of P680+ on the chlorophyll (PD2) that is located on the D2 side of the reaction center.
| S-EPMC64688 | biostudies-literature
Project description:BackgroundThe growth and development of plants is deleteriously affected by various biotic and abiotic stress factors. Wounding in plants is caused by exposure to environmental stress, mechanical stress, and via herbivory. Typically, oxidative burst in response to wounding is associated with the formation of reactive oxygen species, such as the superoxide anion radical (O2•-), hydrogen peroxide (H2O2) and singlet oxygen; however, few experimental studies have provided direct evidence of their detection in plants. Detection of O2•- formation in plant tissues have been performed using various techniques including electron paramagnetic resonance spin-trap spectroscopy, epinephrine-adrenochrome acceptor methods, staining with dyes such as tetrazolium dye and nitro blue tetrazolium (NBT); however, kinetic measurements have not been performed. In the current study, we provide evidence of O2•- generation and its kinetics in the leaves of spinach (Spinacia oleracea) subjected to wounding.MethodsReal-time monitoring of O2•- generation was performed using catalytic amperometry. Changes in oxidation current for O2•- was monitored using polymeric iron-porphyrin-based modified carbon electrodes (φ = 1 mm) as working electrode with Ag/AgCl as the reference electrode.ResultThe results obtained show continuous generation of O2•- for minutes after wounding, followed by a decline. The exogenous addition of superoxide dismutase, which is known to dismutate O2•- to H2O2, significantly suppressed the oxidation current.ConclusionCatalytic amperometric measurements were performed using polymeric iron-porphyrin based modified carbon electrode. We claim it to be a useful tool and a direct method for real-time monitoring and precise detection of O2•- in biological samples, with the potential for wide application in plant research for specific and sensitive detection of O2•-.
| S-EPMC5527980 | biostudies-literature
Project description:Cyclic nitrones have been employed for decades as spin trapping reagents for the detection and identification of transient radicals, and have been employed as pharmacological agent against ROS-mediated toxicity. The short half-life of the nitrone-superoxide adducts limits the application of nitrones in biological millieu, and therefore investigaton of the redox properties of the superoxide adducts is important. Moreover, computational investigation of the redox properties of the nitrones and their corresponding spin adducts may provide new insights into the nature of their pharmacological activity against ROS-induced toxicity. In general, electron-withdrawing group substitution at the C-5 position results in higher EAs and IPs making these substituted nitrones more susceptible to reduction but more difficult to oxidize compared to DMPO. One-electron reduction and oxidation of nitrones both resulted in elongated N-C(2) bonds indicating the tendency of radical anion and cation forms of nitrone to undergo ring-opening. The EAs and IPs of various O(2)(*-) adducts indicate that DEPMPO-O(2)H is the most difficult to reduce and oxidize compared to the O(2)(*-) adducts of DMPO, EMPO, and AMPO. In general, nitroxides gave higher EAs compared to nitrones making them more suceptible to reduction. One-electron oxidation of nitroxides leads to elongation of the N-C(2) bond but not for their reduction. The energetics of redox reaction of O(2)(*-) adducts was also explored. Results indicate that the reduction of O(2)(*-) adducts with O(2)(*-) is preferred followed by their oxidation by O(2) and then by O(2)(*-), but the maximum difference between these free energies of redox reactions in aqueous solution is only 0.21 kcal/mol. The preferred decomposition pathways for the one-electron oxidation and reduction of nitroxides was also explored, and formation of potentially biologically active products such as NO, H(2)O(2), and hydroxamic acid was predicted.
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Project description:Titanium dioxide (TiO2) anatase nanoparticles (NPs) are metal oxide NPs commercialized for several uses of everyday life. However their toxicity has been poorly investigated. Cellular internalization of NPs has been shown to activate macrophages and neutrophils that contribute to superoxide anion production by the NADPH oxidase complex. Transmission electron micrososcopy images showed that the membrane fractions were close to the NPs while fluorescence indicated an interaction between NPs and cytosolic proteins. Using a cell-free system, we have investigated the influence of TiO2 NPs on the behavior of the NADPH oxidase. In the absence of the classical activator molecules of the enzyme (arachidonic acid) but in the presence of TiO2 NPs, no production of superoxide ions could be detected indicating that TiO2 NPs were unable to activate by themselves the complex. However once the NADPH oxidase was activated (i.e., by arachidonic acid), the rate of superoxide anion production went up to 140% of its value without NPs, this effect being dependent on their concentration. In the presence of TiO2 nanoparticles, the NADPH oxidase produces more superoxide ions, hence induces higher oxidative stress. This hyper-activation and the subsequent increase in ROS production by TiO2 NPs could participate to the oxidative stress development.
| S-EPMC4699827 | biostudies-literature
Project description:The strong ROS (reactive oxygen species) production, part of an antioxidant response of human fibroblasts triggered by DHA (docosahexaenoic acid; C(22:6,n-3), served as a model for deciphering the relative contribution of NOX (NADPH oxidase) to ROS production, as the role of this enzymatic system remains controversial. Using hydroxyethidium fluorescence for fibroblast ROS production, RT (reverse transcriptase)-PCR for NOX 4 mRNA quantification and mRNA silencing, we show that ROS production evolves in parallel with the catalytic activity of NOX and is suppressed by siNOX 4 (small interference oligonucleotide RNA directed against NOX 4) silencing. Apocynin and plumbagin, specific inhibitors of NOX, prevent ROS production in this cellular model and confirm the role of NOX 4 for this production. Furthermore, we show that, in cell lysates, NOX 4 activity can be modulated by PUFAs (polyunsaturated fatty acids) at the micromolar level in the presence of calcium: NOX 4 activity is increased by arachidonic acid (C20:4,n-6) (approximately 175% of the control), and conjugated linoleic acid (C18:2 [9Z,11E]) is a potent inhibitor (50% of the control). Unexpectedly, intracellular superoxide dismutase does not participate in the modulation of this ROS production and the opposite effects of some PUFAs, described in our experiments, could suggest another way of regulating NOX activity.
| S-EPMC1948982 | biostudies-literature
Project description:Increases in the production and applications of graphene oxide (GO), coupled with reports of its toxic effects, are raising concerns about its health and ecological risks. To better understand GO's fate and transport in aquatic environments, we investigated its reactivity with three major reactive oxygen species (ROS): HO˙, 1O2, and O2˙-. Second-order degradation rate constants were calculated on the loss of dissolved organic carbon (DOC) and steady-state concentration of individual ROS species. Absolute second-order rate constants were determined by competition kinetics to be 6.24 × 104, 8.65 × 102, and 0.108 mg-C-1 L s-1 for HO˙, 1O2, and O2˙-, respectively. Photoreduced GO products had a similar reactivity to HO˙ as GO, with rate constants comparable to polycyclic aromatic compounds, but about two times higher than dissolved organic matter on a per carbon basis. Reaction with HO˙ resulted in decomposition of GO, with loss of color and formation of photoluminescent products. In contrast, reaction with 1O2 showed no effect on DOC, UV-vis spectra or particle size, while reaction with O2˙- slightly reduced GO. These results demonstrate that interactions with ROS will affect GO's persistence in water and should be considered in exposure assessment or environmental application of GO.
| S-EPMC7098813 | biostudies-literature