Unknown

Dataset Information

0

Polymorphisms in PRKCDBP, a Transcriptional Target of TNF-α, Are Associated With Inflammatory Bowel Disease in Korean.


ABSTRACT:

Background/aims

Emerging data indicate that polymorphic sequence variations in the tumor necrosis factor alpha (TNF-α) gene may affect its production, and be associated with the risk of inflammatory bowel disease (IBD). PRKCDBP is a putative tumor suppressor gene and a transcriptional target of TNF-α. The aim of this case-control study is to explore the possible association of single nucleotide polymorphisms (SNPs) in PRKCDBP with the development of IBD in Koreans.

Methods

Genotyping analysis of four SNPs of PRKCDBP [rs35301211 (G210A), rs11544766 (G237C), rs12294600 (C797T), and rs1051992 (T507C)] was performed on 170 ulcerative colitis (UC),131 Crohn's disease (CD) patients, and 100 unrelated healthy controls using polymerase chain reaction and restriction fragment length polymorphism.

Results

Heterozygous configuration of three SNPs (G210A, G237C, and C797T) was very rare in both patients and healthy controls. However, allele frequencies of the T507C SNP showed a significant difference between UC patients and controls (P=0.037). The CC genotype of the T507C SNP was identified in 46.6% (61 of 131) of CD and 49.4% (84 of 170) of UC patients, but only in 33.0% (33 of 100) of healthy controls. Furthermore, CC homozygosity was more prevalent than TC heterozygosity in both CD and UC patients versus controls (P=0.016; gender-adjusted odds ratio [aOR], 2.16; 95% confidence interval [CI], 1.16-4.04 and P=0.009; aOR, 2.09; 95% CI, 1.193.64; respectively).

Conclusions

Our results suggest that the T507C SNP in PRKCDBP, a TNF-α-inducible gene, might be associated with susceptibility to IBD (particularly UC) development in Koreans.

SUBMITTER: Kim JW 

PROVIDER: S-EPMC4479739 | biostudies-literature | 2015 Jul

REPOSITORIES: biostudies-literature

altmetric image

Publications

Polymorphisms in PRKCDBP, a Transcriptional Target of TNF-α, Are Associated With Inflammatory Bowel Disease in Korean.

Kim Jung-Wook JW   Lee Chang Kyun CK   Kim Hyo Jong HJ   Shim Jae-Jun JJ   Jang Jae Young JY   Dong Seok Ho SH   Kim Byung-Ho BH   Chang Young Woon YW   Chi Sung-Gil SG  

Intestinal research 20150609 3


<h4>Background/aims</h4>Emerging data indicate that polymorphic sequence variations in the tumor necrosis factor alpha (TNF-α) gene may affect its production, and be associated with the risk of inflammatory bowel disease (IBD). PRKCDBP is a putative tumor suppressor gene and a transcriptional target of TNF-α. The aim of this case-control study is to explore the possible association of single nucleotide polymorphisms (SNPs) in PRKCDBP with the development of IBD in Koreans.<h4>Methods</h4>Genotyp  ...[more]

Similar Datasets

| 2161631 | ecrin-mdr-crc
| S-EPMC5628358 | biostudies-literature
| S-EPMC9356186 | biostudies-literature
| S-EPMC10838338 | biostudies-literature
| S-EPMC4755796 | biostudies-literature
| S-EPMC10784143 | biostudies-literature
| S-EPMC6282128 | biostudies-literature
| S-EPMC11406300 | biostudies-literature
| S-EPMC11292712 | biostudies-literature
| S-EPMC4449411 | biostudies-literature