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Use of Unamplified RNA/cDNA-Hybrid Nanopore Sequencing for Rapid Detection and Characterization of RNA Viruses.


ABSTRACT: Nanopore sequencing, a novel genomics technology, has potential applications for routine biosurveillance, clinical diagnosis, and outbreak investigation of virus infections. Using rapid sequencing of unamplified RNA/cDNA hybrids, we identified Venezuelan equine encephalitis virus and Ebola virus in 3 hours from sample receipt to data acquisition, demonstrating a fieldable technique for RNA virus characterization.

SUBMITTER: Kilianski A 

PROVIDER: S-EPMC4982148 | biostudies-literature | 2016 Aug

REPOSITORIES: biostudies-literature

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Use of Unamplified RNA/cDNA-Hybrid Nanopore Sequencing for Rapid Detection and Characterization of RNA Viruses.

Kilianski Andy A   Roth Pierce A PA   Liem Alvin T AT   Hill Jessica M JM   Willis Kristen L KL   Rossmaier Rebecca D RD   Marinich Andrew V AV   Maughan Michele N MN   Karavis Mark A MA   Kuhn Jens H JH   Honko Anna N AN   Rosenzweig C Nicole CN  

Emerging infectious diseases 20160815 8


Nanopore sequencing, a novel genomics technology, has potential applications for routine biosurveillance, clinical diagnosis, and outbreak investigation of virus infections. Using rapid sequencing of unamplified RNA/cDNA hybrids, we identified Venezuelan equine encephalitis virus and Ebola virus in 3 hours from sample receipt to data acquisition, demonstrating a fieldable technique for RNA virus characterization. ...[more]

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