Dataset Information

Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas.

ABSTRACT: Genetic alterations in K-ras and p53 are thought to be critical in pancreatic cancer development and progression. However, K-ras and p53 expression in pancreatic adenocarcinoma have not been systematically examined in The Cancer Genome Atlas (TCGA) Data Portal. Information regarding K-ras and p53 alterations, mRNA expression data, and protein/protein phosphorylation abundance was retrieved from The Cancer Genome Atlas (TCGA) databases, and analyses were performed by the cBioPortal for Cancer Genomics. The mutual exclusivity analysis showed that events in K-ras and p53 were likely to co-occur in pancreatic adenocarcinoma (Log odds ratio = 1.599, P = 0.006). The graphical summary of the mutations showed that there were hotspots for protein activation. In the network analysis, no solid association between K-ras and p53 was observed in pancreatic adenocarcinoma. In the survival analysis, neither K-ras nor p53 were associated with both survival events. As in the data mining study in the TCGA databases, our study provides a new perspective to understand the genetic features of K-ras and p53 in pancreatic adenocarcinoma.

SUBMITTER: Lu L

PROVIDER: S-EPMC5526503 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature

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Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas.

Lu Liming L Zeng Jingchun J

PloS one 20170725 7

Genetic alterations in K-ras and p53 are thought to be critical in pancreatic cancer development and progression. However, K-ras and p53 expression in pancreatic adenocarcinoma have not been systematically examined in The Cancer Genome Atlas (TCGA) Data Portal. Information regarding K-ras and p53 alterations, mRNA expression data, and protein/protein phosphorylation abundance was retrieved from The Cancer Genome Atlas (TCGA) databases, and analyses were performed by the cBioPortal for Cancer Gen ...[more]

PMID: 28742845

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Dataset Information

Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas.

Publications

Evaluation of K-ras and p53 expression in pancreatic adenocarcinoma using the cancer genome atlas.

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