Dataset Information

Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae).

ABSTRACT:

Premise

Microsatellite markers were developed for sandmyrtle, Kalmia buxifolia (Ericaceae), to facilitate phylogeographic studies in this taxon and possibly many of its close relatives.

Methods and results

Forty-eight primer pairs designed from paired-end Illumina MiSeq data were screened for robust amplification. Sixteen pairs were amplified again, but with fluorescently labeled primers to facilitate genotyping. Resulting chromatograms were evaluated for variability using three populations from Tennessee, North Carolina, and New Jersey, USA. Eleven primer pairs were reliable and polymorphic (mean 3.92 alleles), one was reliable but monomorphic, and four were not reliable. The markers exhibited lower heterozygosity (mean 0.246) than expected (mean 0.464). Cross-amplification in the remaining nine Kalmia species exhibited a phylogenetic pattern, suggesting broad applicability of the markers across the genus.

Conclusions

These microsatellite markers will be useful in population genetics and species boundaries studies of K. buxifolia, K. procumbens, and likely all other Kalmia species.

SUBMITTER: Gillespie EL

PROVIDER: S-EPMC6580982 | biostudies-literature | 2019 Jun

REPOSITORIES: biostudies-literature

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Publications

Microsatellite markers for the biogeographically enigmatic sandmyrtle (<i>Kalmia buxifolia</i>, Phyllodoceae: Ericaceae).

Gillespie Emily L EL Madsen-McQueen Tesa T Eriksson Torsten T Bailey Adam A Murrell Zack E ZE

Applications in plant sciences 20190605 6

<h4>Premise</h4>Microsatellite markers were developed for sandmyrtle, <i>Kalmia buxifolia</i> (Ericaceae), to facilitate phylogeographic studies in this taxon and possibly many of its close relatives.<h4>Methods and results</h4>Forty-eight primer pairs designed from paired-end Illumina MiSeq data were screened for robust amplification. Sixteen pairs were amplified again, but with fluorescently labeled primers to facilitate genotyping. Resulting chromatograms were evaluated for variability using ...[more]

PMID: 31236314

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