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Longitudinal molecular trajectories of diffuse glioma in adults.


ABSTRACT: The evolutionary processes that drive universal therapeutic resistance in adult patients with diffuse glioma remain unclear1,2. Here we analysed temporally separated DNA-sequencing data and matched clinical annotation from 222 adult patients with glioma. By analysing mutations and copy numbers across the three major subtypes of diffuse glioma, we found that driver genes detected at the initial stage of disease were retained at recurrence, whereas there was little evidence of recurrence-specific gene alterations. Treatment with alkylating agents resulted in a hypermutator phenotype at different rates across the glioma subtypes, and hypermutation was not associated with differences in overall survival. Acquired aneuploidy was frequently detected in recurrent gliomas and was characterized by IDH mutation but without co-deletion of chromosome arms 1p/19q, and further converged with acquired alterations in the cell cycle and poor outcomes. The clonal architecture of each tumour remained similar over time, but the presence of subclonal selection was associated with decreased survival. Finally, there were no differences in the levels of immunoediting between initial and recurrent gliomas. Collectively, our results suggest that the strongest selective pressures occur during early glioma development and that current therapies shape this evolution in a largely stochastic manner.

SUBMITTER: Barthel FP 

PROVIDER: S-EPMC6897368 | biostudies-literature | 2019 Dec

REPOSITORIES: biostudies-literature

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Longitudinal molecular trajectories of diffuse glioma in adults.

Barthel Floris P FP   Johnson Kevin C KC   Varn Frederick S FS   Moskalik Anzhela D AD   Tanner Georgette G   Kocakavuk Emre E   Anderson Kevin J KJ   Abiola Olajide O   Aldape Kenneth K   Alfaro Kristin D KD   Alpar Donat D   Amin Samirkumar B SB   Ashley David M DM   Bandopadhayay Pratiti P   Barnholtz-Sloan Jill S JS   Beroukhim Rameen R   Bock Christoph C   Brastianos Priscilla K PK   Brat Daniel J DJ   Brodbelt Andrew R AR   Bruns Alexander F AF   Bulsara Ketan R KR   Chakrabarty Aruna A   Chakravarti Arnab A   Chuang Jeffrey H JH   Claus Elizabeth B EB   Cochran Elizabeth J EJ   Connelly Jennifer J   Costello Joseph F JF   Finocchiaro Gaetano G   Fletcher Michael N MN   French Pim J PJ   Gan Hui K HK   Gilbert Mark R MR   Gould Peter V PV   Grimmer Matthew R MR   Iavarone Antonio A   Ismail Azzam A   Jenkinson Michael D MD   Khasraw Mustafa M   Kim Hoon H   Kouwenhoven Mathilde C M MCM   LaViolette Peter S PS   Li Meihong M   Lichter Peter P   Ligon Keith L KL   Lowman Allison K AK   Malta Tathiane M TM   Mazor Tali T   McDonald Kerrie L KL   Molinaro Annette M AM   Nam Do-Hyun DH   Nayyar Naema N   Ng Ho Keung HK   Ngan Chew Yee CY   Niclou Simone P SP   Niers Johanna M JM   Noushmehr Houtan H   Noorbakhsh Javad J   Ormond D Ryan DR   Park Chul-Kee CK   Poisson Laila M LM   Rabadan Raul R   Radlwimmer Bernhard B   Rao Ganesh G   Reifenberger Guido G   Sa Jason K JK   Schuster Michael M   Shaw Brian L BL   Short Susan C SC   Smitt Peter A Sillevis PAS   Sloan Andrew E AE   Smits Marion M   Suzuki Hiromichi H   Tabatabai Ghazaleh G   Van Meir Erwin G EG   Watts Colin C   Weller Michael M   Wesseling Pieter P   Westerman Bart A BA   Widhalm Georg G   Woehrer Adelheid A   Yung W K Alfred WKA   Zadeh Gelareh G   Huse Jason T JT   De Groot John F JF   Stead Lucy F LF   Verhaak Roel G W RGW  

Nature 20191120 7785


The evolutionary processes that drive universal therapeutic resistance in adult patients with diffuse glioma remain unclear<sup>1,2</sup>. Here we analysed temporally separated DNA-sequencing data and matched clinical annotation from 222 adult patients with glioma. By analysing mutations and copy numbers across the three major subtypes of diffuse glioma, we found that driver genes detected at the initial stage of disease were retained at recurrence, whereas there was little evidence of recurrenc  ...[more]

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