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Crystal structures and Hirshfeld surface analyses of two new tetra-kis-substituted pyrazines and a degredation product.

ABSTRACT: The two new tetra-kis-substituted pyrazines, 1,1',1'',1'''-(pyrazine-2,3,5,6-tetra-yl) tetra-kis-(N,N-di-methyl-methanamine), C16H32N6, (I) and N,N',N'',N'''-[pyrazine-2,3,5,6-tetra-yltetra-kis-(methyl-ene)]tetra-kis-(N-methyl-aniline), C36H40N6, (II), both crystallize with half a mol-ecule in the asymmetric unit; the whole mol-ecules are generated by inversion symmetry. There are weak intra-molecular C-H?N hydrogen bonds present in both mol-ecules and in (II) the pendant N-methyl-aniline rings are linked by a C-H?? inter-action. The degredation product, N,N'-[(6-phenyl-6,7-di-hydro-5H-pyrrolo-[3,4-b]pyrazine-2,3-di-yl)bis(methyl-ene)]bis-(N-methyl-aniline), C28H29N5, (III), was obtained several times by reacting (II) with different metal salts. Here, the 6-phenyl ring is almost coplanar with the planar pyrrolo-[3,4-b]pyrazine unit (r.m.s. deviation = 0.029?Å), with a dihedral angle of 4.41?(10)° between them. The two N-meth-yl-aniline rings are inclined to the planar pyrrolo-[3,4-b]pyrazine unit by 88.26?(10) and 89.71?(10)°, and to each other by 72.56?(13)°. There are also weak intra-molecular C-H?N hydrogen bonds present involving the pyrazine ring and the two N-methyl-aniline groups. In the crystal of (I), there are no significant inter-molecular contacts present, while in (II) mol-ecules are linked by a pair of C-H?? inter-actions, forming chains along the c-axis direction. In the crystal of (III), mol-ecules are linked by two pairs of C-H?? inter-actions, forming inversion dimers, which in turn are linked by offset ?-? inter-actions [inter-centroid distance = 3.8492?(19)?Å], forming ribbons along the b-axis direction.

SUBMITTER: Tesouro Vallina A

PROVIDER: S-EPMC7057384 | biostudies-literature | 2020 Mar

REPOSITORIES: biostudies-literature

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Crystal structures and Hirshfeld surface analyses of two new tetra-kis-substituted pyrazines and a degredation product.

Tesouro Vallina Ana A Stoeckli-Evans Helen H

Acta crystallographica. Section E, Crystallographic communications 20200218 Pt 3

The two new tetra-kis-substituted pyrazines, 1,1',1'',1'''-(pyrazine-2,3,5,6-tetra-yl) tetra-kis-(N,N-di-methyl-methanamine), C16H32N6, (I) and N,N',N'',N'''-[pyrazine-2,3,5,6-tetra-yltetra-kis-(methyl-ene)]tetra-kis-(N-methyl-aniline), C36H40N6, (II), both crystallize with half a mol-ecule in the asymmetric unit; the whole mol-ecules are generated by inversion symmetry. There are w ...[more]

PMID: 32148884

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Project description:Two polymorphs of the title tetra-kis-substituted pyrazine carb-oxy-lic acid, 3,3',3'',3'''-{[pyrazine-2,3,5,6-tetra-yltetra-kis-(methyl-ene))tetra-kis-(sulfanedi-yl]}tetra-propionic acid, C20H28N2O8S4, (H4L1), have been obtained, H4L1_A and H4L1_B. Each structure crystallized with half a mol-ecule in the asymmetric unit of a triclinic P unit cell. The whole mol-ecules are generated by inversion symmetry, with the pyrazine rings being located about inversion centers. The crystals of H4L1_B were of poor quality, but the X-ray diffraction analysis does show the change in conformation of the -CH2-S-CH2-CH2- side chains compared to those in polymorph H4L1_A. In the crystal of H4L1_A, mol-ecules are linked by two pairs of O-H⋯O hydrogen bonds, enclosing R 2 2(8) ring motifs forming layers parallel to plane (100), which are linked by C-H⋯O hydrogen bonds to form a supra-molecular framework. In the crystal of H4L1_B, mol-ecules are also linked by two pairs of O-H⋯O hydrogen bonds enclosing R 2 2(8) ring motifs, however here, chains are formed propagating in the [001] direction and stacking up the a-axis. Reaction of H4L1 with Hg(NO3)2 in the presence of a potassium acetate buffer did not produce the expected binuclear complex, instead crystals of a potassium-organic framework were obtained, poly[(μ-3-{[(3,5,6-tris-{[(2-carb-oxy-eth-yl)sulfan-yl]meth-yl}pyrazin-2-yl)meth-yl]sulfan-yl}propano-ato)potassium], [K(C20H27N2O8S4)] n (KH3L1). The organic mono-anion possesses inversion symmetry with the pyrazine ring being located about an inversion center. A carb-oxy H atom is disordered by symmetry and the charge is compensated for by a potassium ion. A similar reaction with Zn(NO3)2 resulted in the formation of crystals of a dipotassium-organic framework, poly[(μ-3,3'-{[(3,6-bis-{[(2-carb-oxy-eth-yl)sulfan-yl]meth-yl}pyrazine-2,5-di-yl)bis(methyl-ene)]bis-(sulfanedi-yl)}dipropionato)dipotassium], [K2(C20H26N2O8S4)] n (K2H2L1). Here, the organic di-anion possesses inversion symmetry with the pyrazine ring being located about an inversion center. Two symmetry-related acid groups are deprotonated and the charges are compensated for by two potassium ions.

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Crystal structures and Hirshfeld surface analyses of two new tetra-kis-substituted pyrazines and a degredation product.

Publications

Crystal structures and Hirshfeld surface analyses of two new tetra-kis-substituted pyrazines and a degredation product.

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