Dataset Information

Apoptosis detection via automated algorithms to analyze biomarker translocation in reporter cells.

ABSTRACT: Rapid, efficient, and robust quantitative analyses of dynamic apoptotic events are essential in a high-throughput screening workflow. Currently used methods have several bottlenecks, specifically, limitations in available fluorophores for downstream assays and misinterpretation of statistical image data analysis. In this study, we developed cytochrome-C (Cyt-C) and caspase-3/-8 reporter cell lines using lung (PC9) and breast (T47D) cancer cells, and characterized them from the response to apoptotic stimuli. In these two reporter cell lines, the spatial fluorescent signal translocation patterns served as reporters of activations of apoptotic events, such as Cyt-C release and caspase-3/-8 activation. We also developed a vision-based, tunable, automated algorithm in MATLAB to implement the robust and accurate analysis of signal translocation in single or multiple cells. Construction of the reporter cell lines allows live monitoring of apoptotic events without the need for any other dyes or fixatives. Our algorithmic implementation forgoes the use of simple image statistics for more robust analytics. Our optimized algorithm can achieve a precision greater than 90% and a sensitivity higher than 85%. Combining our automated algorithm with reporter cells bearing a single-color dye/fluorophore, we expect our approach to become an integral component in the high-throughput drug screening workflow.

SUBMITTER: Ahmed AHR

PROVIDER: S-EPMC7703573 | biostudies-literature | 2020 May

REPOSITORIES: biostudies-literature

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Apoptosis detection via automated algorithms to analyze biomarker translocation in reporter cells.

Ahmed A H Rezwanuddin AHR Dereli-Korkut Zeynep Z Lee Joanne Haeun JH Piracha Sidra S Gilchrist M Lane ML Jiang Xuejun X Wang Sihong S

Biotechnology and bioengineering 20200203 5

Rapid, efficient, and robust quantitative analyses of dynamic apoptotic events are essential in a high-throughput screening workflow. Currently used methods have several bottlenecks, specifically, limitations in available fluorophores for downstream assays and misinterpretation of statistical image data analysis. In this study, we developed cytochrome-C (Cyt-C) and caspase-3/-8 reporter cell lines using lung (PC9) and breast (T47D) cancer cells, and characterized them from the response to apopto ...[more]

PMID: 31956989

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Dataset Information

Apoptosis detection via automated algorithms to analyze biomarker translocation in reporter cells.

Publications

Apoptosis detection via automated algorithms to analyze biomarker translocation in reporter cells.

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