Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The complete mitochondrial genome of Xyrias revulsus（Jordan & Snyder, 1901）.

ABSTRACT: Xyrias revulsus is one of the species in the China-Vietnam Collective Fishery Zone, which has a few relevant studies. In this study, the mitochondrial genome of X. revulsus was determined for the first time using next-generation sequencing; the overall base components of mitogenome consisting of 17,784 bp was 32.45% for A, 25.76% for T, 15.72% for G, 26.08% for C, and its GC content was 41.8%. The mitochondrial circular genome was composed of 13 protein-coding genes, 22 transfer RNAs, 2D-loop, and 2 ribosomal RNAs. Polygenetic analysis showed that the X. revulsus was very close to Ophisurus macrorhynchos. It can provide data reference for the analysis of genetic evolution of this species.

SUBMITTER: Liang F

PROVIDER: S-EPMC7782292 | biostudies-literature | 2020 Aug

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

The complete mitochondrial genome of Xyrias revulsus（Jordan & Snyder, 1901）.

Liang Fangmei F Liu Lili L Wang Yanmei Y Wang Pengliang P Zhu Peng P Zhang Hong H Wu Haiping H Lu Min M Meng Hongji H Huang Haihua H Li Qiuhui Q Xu Youhou Y

Mitochondrial DNA. Part B, Resources 20200812 3

Xyrias revulsus is one of the species in the China-Vietnam Collective Fishery Zone, which has a few relevant studies. In this study, the mitochondrial genome of X. revulsus was determined for the first time using next-generation sequencing; the overall base components of mitogenome consisting of 17,784 bp was 32.45% for A, 25.76% for T, 15.72% for G, 26.08% for C, and its GC content was 41.8%. The mitochondrial circular genome was composed of 13 protein-coding genes, 22 transfer RN ...[more]

PMID: 33458092

Similar Datasets

The complete mitochondrial genome of Conger erebennus (Jordan & Snyder, 1901) (Anguilliformes: Congridae) from Liaoning Province, China.

Project description:This study aims to explore the complete mitochondrial genome and phylogenetic relationship of Conger erebennus (Jordan & Snyder, 1901) (Anguilliformes: Congridae). The information about the mitogenome was obtained using Illumina's next-generation sequencing technologies. The results revealed that the length of the circular mitogenome was 18,777 bp and it contained 37 genes and three unidentical control regions (CRs). The mitogenome contained 62.78% AT bases with an anti-G bias similar to that in most marine fishes. The maximum-likelihood phylogenetic tree of Anguiliformes based on encoding genes revealed that C. erebennus was in the same clade as other species of Congridae. The results of this study will progress the future of evolutionary research and species identification.

| S-EPMC9621232 | biostudies-literature

Complete mitochondrial genome of Hydrolagus mitsukurii (Jordan & Snyder, 1904).

Project description:Holocephali has foreseeable value to help our understanding of vertebrate genome evolution due to its phylogenetic position. In this study, we reported a complete mitochondrial genome of Hydrolagus mitsukurii, a species of holocephalans. The mitochondrial genome is 20,486 bp in length and comprised 13 PCGs, 2 rRNA, 22 tRNA, and 1 control region (D-loop), as well as a long noncoding insertion between tRNAThr and tRNAPro. A phylogenetic tree based on 13 PCGs showed that Hydrolagus mitsukurii was grouped with the members of the family Chimaeridae. Furthermore, the phylogenetic tree further supported the paraphyletic clades of Hydrolagus and Chimera.

| S-EPMC10281295 | biostudies-literature

The complete mitochondrial genome of Nycteribia parvula Speiser, 1901 (Diptera, Nycteribiidae).

Project description:Species of the family Nycteribiidae are blood-sucking ectoparasites that parasitize bats. To further enrich the molecular data of species in the family Nycteribiidae, the complete mitochondrial genome of Nycteribia parvula was sequenced for the first time in this study. The complete mitochondrial genome of N. parvula is 16,060 base pairs (bp) in size, including 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes, and a control region. The nucleotide contents of A, T, G, and C are respectively 40.86%, 42.19%, 6.51%, and 10.44%. The phylogenetic analysis based on 13 PCGs supports the monophyly of the family Nycteribiidae, and N. parvula is the closest relative to Phthiridium szechuanum.

| S-EPMC9970243 | biostudies-literature

The complete mitochondrial genome of Crematogaster matsumurai (Forel 1901) (Hymenoptera: Formicidae) and its phylogenetic relationship.

Project description:Crematogaster matsumurai (Forel 1901) is an important arboreal ant species commonly found on Phyllostachys heterocycla (Carr.) in Lishui, Zhejiang, China. This study analyzed the mitochondrial genome sequence of C. matsumurai and discussed its phylogenetic relationship in Hymenoptera. The circular mitochondrial genome was 16,028 bp long, including a standard set of 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and 13 protein-coding genes (PCGs), which showed the typical insect mitochondrial genome arrangement. The AT and GC contents of the mitochondrial genome sequence were 76.92% and 23.08%, respectively. The maximum-likelihood (ML) phylogenetic analysis based on whole mitochondrial genome sequences showed that C. matsumurai is closest to Crematogaster teranishii.

| S-EPMC9336469 | biostudies-literature

Complete mitochondrial genome of Oncorhynchus masou formosanus (Jordan & Oshima, 1919) (Pisces, Salmonidae).

Project description:We describe the complete mitochondrial genome sequence of Oncorhynchus masou formosanus, which is a critically endangered landlocked salmon of Taiwan by using next-generation sequencing. The circle genome (16,653 bp) has the typical vertebrate mitochondrial gene arrangement, consisting of 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a non-coding control region. The overall base composition of O. m. formosanus is 28.6% for A, 26.8% for T, 16.5% for G and 28.1% for C, with a slight AT bias of 55.4%.

| S-EPMC7871836 | biostudies-literature

The complete mitochondrial genome of the strawberry aphid Chaetosiphon fragaefolii Cockerell, 1901 (Hemiptera: Aphididae) from California, USA.

Project description:The aphid Chaetosiphon fragaefolii Cockerell, 1901 is an agricultural pest and known vector of strawberry viruses. To better understand its biology and systematics, we performed a genomic analysis on C. fragaefolii collected from Quinalt strawberry plants from Pacific Grove, Monterey county, California, USA using Oxford Nanopore and Illumina sequencing. The resulting data were used to assemble the aphids complete mitogenome. The mitogenome of C. fragaefolii is 16,108 bp in length and contains 2 rRNA, 13 protein-coding, and 22 tRNA genes (GenBank accession number LC590896). The mitogenome is similar in content and organization to other Aphididae. Phylogenetic analysis of the C. fragaefolii mitogenome resolved it in a fully supported clade in the tribe Macrosiphini. Analysis of the cox1 barcode sequence of C. fragaefolii from California found exact and nearly identical sequences to C. fragaefolii and Chaetosiphon thomasi Hille Ris Lambers, 1953, suggesting the two species are conspecific.

| S-EPMC8291070 | biostudies-literature

Complete mitochondrial genome of Asian longhorned tick, Haemaphysalis longicornis, Neumann, 1901 (Acari: Ixodida: Ixodidae) identified in the United States.

Project description:Haemaphysalis longicornis (Ixodida: Ixodidae), the Asian longhorned tick, which is native to temperate East Asia, has been recently detected in the northeastern region of the United States, drawing concerns about its potential impact on the US animal and public health sectors. Knowledge about the genetic features of H. longicornis found in the US is limited. Therefore, we sequenced the complete mitochondrial genome (mt-genome) from two H. longicornis ticks recently collected in the State of New York, USA, in 2020. These ticks were morphologically identified and tested for tick-borne pathogens at the Connecticut Veterinary Medical Diagnostic Laboratory (Storrs, CT). The mt-genome was 14,694 bp in length and encoded 37 genes, including 13 protein-coding genes, 22 transfer RNAs, and two ribosomal RNAs. Phylogenetic analysis showed that the mt-genome clustered with those of other H. longicornis identified in China. The mt-genome sequence was 99.7% identical to a H. longicornis mt-genome (GenBank: MK439888) collected in China. The cox1 gene haplotype in these ticks belonged to the H1 type, which is the dominant haplotype present in central NJ and Staten Island, NY. The complete mt-genome data are needed to provide insights into genetic changes and phylogenetic studies of H. longicornis ticks.

| S-EPMC8291064 | biostudies-literature

A new marine gobiid species of the genus Clariger Jordan & Snyder (Gobiidae, Teleostei) from Taiwan.

Project description:A new species of Clariger Jordan & Snyder, 1901 was collected from northern Taiwan. The genus was previously known only from Japanese waters. This discovery is the first formal and southernmost record of these marine gobies from the waters of subtropical Taiwan. The new species, Clariger taiwanensissp. n., is distinguished from its congeners by a unique combination of features: (1) fin rays: dorsal-fin rays III, I/8; anal-fin rays modally I/8; and pectoral-fin rays modally 19 (2+16+1); (2) longitudinal dermal ridge on head with 6 barbels; and (3) specific coloration pattern: head and trunk dark brown with scattered pale spots and blotches; cheek, ventral portion of head sometimes pale with deep brown spots; pectoral-fin base with a dark brown band; and caudal fin mostly dark brown proximally and with alternating and irregular dark brown and pale bands distally. A diagnostic key to all nominal species from Japan and Taiwan is provided.

| S-EPMC3368280 | biostudies-literature

Complete mitochondrial genome sequence of historical olive (Olea europaea Linnaeus 1753 subsp. europaea) cultivar Mehras in Jordan.

Project description:The complete mitochondrial genome of the olive cultivar Mehras was determined using high-throughput sequencing technology. It consisted of 710,808 base pairs and comprised 70 genes, including 44 protein-coding genes, 23 tRNA genes, and three rRNA genes, with a GC content of 44.7%. Significant single nucleotide polymorphisms (SNPs) and insertions/deletions (InDels) were detected throughout the mitogenome. Phylogenetic analysis was conducted using other genotypes, including five olive cultivars, three related species, and Olea exasperata as an out-group. The analysis revealed that the olive cultivar Mehras shares an ancient common ancestor with the Frantoio cultivar from Italy and the Manzanilla cultivar from Spain, which confirms previous findings based on plastome sequencing.

| S-EPMC10796119 | biostudies-literature

The complete mitochondrial genome of the burrowing ghost shrimp, Nihonotrypaea harmandi (Bouvier, 1901), (Crustacea, Decapoda, Axiidea, Callianassidae) - a validation of the genus and species classifications.

Project description:The complete mitochondrial genome of the burrowing ghost shrimp Nihonotrypaea harmandi was reconstructed using the Illumina HiSeq platform. The genome was 15,272 bp in length made up of 37 mitochondrial genes (13 CDSs, 22 tRNAs, and 2 rRNAs) in the same order as other Nihonotrypaea species. Phylogenetic analyses suggested that Nihonotrypaea is a valid genus, and that N. harmandi can be phylogenetically marginally separated from N. japonica, though some authors considered the former as a synonym of the latter.

| S-EPMC7800191 | biostudies-literature