Dataset Information

Dynamic band structure measurement in the synthetic space.

ABSTRACT: Band structure theory plays an essential role in exploring physics in both solid-state systems and photonics. Here, we demonstrate a direct experimental measurement of the dynamic band structure in a synthetic space including the frequency axis of light, realized in a ring resonator under near-resonant dynamic modulation. This synthetic lattice exhibits the physical picture of the evolution of the wave vector reciprocal to the frequency axis in the band structure, analogous to a one-dimensional lattice under an external force. We experimentally measure the trajectories of the dynamic band structure by selectively exciting the band with a continuous wave source with its frequency scanning across the entire energy regime of the band. Our results not only provide a new perspective for exploring the dynamics in fundamental physics of solid-state and photonic systems with the concept of the synthetic dimension but also enable great capability in band structure engineering in photonics.

SUBMITTER: Li G

PROVIDER: S-EPMC7793575 | biostudies-literature | 2021 Jan

REPOSITORIES: biostudies-literature

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Dynamic band structure measurement in the synthetic space.

Li Guangzhen G Zheng Yuanlin Y Dutt Avik A Yu Danying D Shan Qingrou Q Liu Shijie S Yuan Luqi L Fan Shanhui S Chen Xianfeng X

Science advances 20210108 2

Band structure theory plays an essential role in exploring physics in both solid-state systems and photonics. Here, we demonstrate a direct experimental measurement of the dynamic band structure in a synthetic space including the frequency axis of light, realized in a ring resonator under near-resonant dynamic modulation. This synthetic lattice exhibits the physical picture of the evolution of the wave vector reciprocal to the frequency axis in the band structure, analogous to a one-dimensional ...[more]

PMID: 33524000

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Project description:The structures of RNA molecules are often important for their function and regulation, yet there are no experimental techniques for genome-scale measurement of RNA structure. Here, we describe a novel strategy termed Parallel Analysis of RNA Structure (PARS), which is based on deep sequencing fragments of RNAs that were treated with structure-specific enzymes, thus providing simultaneous in-vitro profiling of the secondary structure of thousands of RNA species at single nucleotide resolution. We apply PARS to profile the secondary structure of the mRNAs of the budding yeast S. cerevisiae and obtain structural profiles for over 3000 distinct transcripts. Analysis of these profiles reveals several RNA structural properties of yeast transcripts, including the existence of more secondary structure over coding regions compared to untranslated regions, a three-nucleotide periodicity of secondary structure across coding regions, and a relationship between the efficiency with which an mRNA is translated and the lack of structure over its translation start site. PARS is readily applicable to other organisms and to profiling RNA structure in diverse conditions, thus enabling studies of the dynamics of secondary structure at a genomic scale. RNA sample was treated with one of two structure-specific enzymes (RNase V1 or RNase S1). Four independent V1 experiments and three independent S1 experiments were carried out. Processed data file linked below. Data processing involves merging (or rather log-ratio-ing) the 7 lanes of SOLiD sequencing data against each other. Also linked below are the genome and transcriptome FASTA files used for mapping, and the annotation file having the format: gene_ID, chromosome, start, end, feature. Start and end are 1-based; feature is "Transcript" for the entire transcript (including introns), "Intron", "Exon", "5UTR" or "3UTR". Genome-wide measurement of RNA secondary structure in yeast, Kertesz et al., Nature Volume:467, Pages:103-107, Date published:(02 September 2010) http://www.nature.com/nature/journal/v467/n7311/abs/nature09322.html

Dataset Information

Dynamic band structure measurement in the synthetic space.

Publications

Dynamic band structure measurement in the synthetic space.

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