Dataset Information

Characterizing modifier genes of cardiac fibrosis phenotype in hypertrophic cardiomyopathy.

ABSTRACT:

Background

Clinical phenotypes of hypertrophic cardiomyopathy (HCM) vary greatly even among patients with the same gene mutations. This variability is largely regulated by unidentified modifier loci. The purpose of the study is to identify modifier genes for cardiac fibrosis-a major phenotype of HCM-using the BXD family, a murine cohort.

Methods

The relative severity of cardiac fibrosis was estimated by quantitation of cardiac collagen volume fraction (CCVF) across 66 members of the BXD family. Quantitative trait locus (QTL) mapping for cardiac fibrosis was done using GeneNetwork. Candidate modifier loci and genes associated with fibrosis were prioritized based on an explicit scoring system. Networks of correlation between fibrosis and cardiac transcriptomes were evaluated to generate causal models of disease susceptibility.

Results

CCVF levels varied greatly within this family. Interval mapping identified a significant CCVF-related QTL on chromosome (Chr) 2 in males, and a significant QTL on Chr 4 Mb in females. The scoring system highlighted two strong candidate genes in the Chr 2 locus-Nek6 and Nr6a1. Both genes are highly expressed in the heart. Cardiac Nek6 mRNA levels are significantly correlated with CCVF. Nipsnap3b and Fktn are lead candidate genes for the Chr 4 locus, and both are also highly expressed in heart. Cardiac Nipsnap3b gene expression correlates well with CCVF.

Conclusion

Our study demonstrated that candidate modifier genes of cardiac fibrosis phenotype in HCM are different in males and females. Nek6 and Nr6a1 are strong candidates in males, while Nipsnap3b and Fktn are top candidates in females.

SUBMITTER: Xu F

PROVIDER: S-EPMC8105878 | biostudies-literature | 2021 May

REPOSITORIES: biostudies-literature

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Publications

Characterizing modifier genes of cardiac fibrosis phenotype in hypertrophic cardiomyopathy.

Xu Fuyi F Chen Yuanjian Y Tillman Kaitlin A KA Cui Yan Y Williams Robert W RW Bhattacharya Syamal K SK Lu Lu L Sun Yao Y

International journal of cardiology 20210130

<h4>Background</h4>Clinical phenotypes of hypertrophic cardiomyopathy (HCM) vary greatly even among patients with the same gene mutations. This variability is largely regulated by unidentified modifier loci. The purpose of the study is to identify modifier genes for cardiac fibrosis-a major phenotype of HCM-using the BXD family, a murine cohort.<h4>Methods</h4>The relative severity of cardiac fibrosis was estimated by quantitation of cardiac collagen volume fraction (CCVF) across 66 members of t ...[more]

PMID: 33529666

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Dataset Information

Characterizing modifier genes of cardiac fibrosis phenotype in hypertrophic cardiomyopathy.

Background

Methods

Results

Conclusion

Publications

Characterizing modifier genes of cardiac fibrosis phenotype in hypertrophic cardiomyopathy.

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