Unknown

Dataset Information

0

Patient-derived models recapitulate heterogeneity of molecular signatures and drug response in pediatric high-grade glioma.


ABSTRACT: Pediatric high-grade glioma (pHGG) is a major contributor to cancer-related death in children. In vitro and in vivo disease models reflecting the intimate connection between developmental context and pathogenesis of pHGG are essential to advance understanding and identify therapeutic vulnerabilities. Here we report establishment of 21 patient-derived pHGG orthotopic xenograft (PDOX) models and eight matched cell lines from diverse groups of pHGG. These models recapitulate histopathology, DNA methylation signatures, mutations and gene expression patterns of the patient tumors from which they were derived, and include rare subgroups not well-represented by existing models. We deploy 16 new and existing cell lines for high-throughput screening (HTS). In vitro HTS results predict variable in vivo response to PI3K/mTOR and MEK pathway inhibitors. These unique new models and an online interactive data portal for exploration of associated detailed molecular characterization and HTS chemical sensitivity data provide a rich resource for pediatric brain tumor research.

SUBMITTER: He C 

PROVIDER: S-EPMC8253809 | biostudies-literature | 2021 Jul

REPOSITORIES: biostudies-literature

altmetric image

Publications

Patient-derived models recapitulate heterogeneity of molecular signatures and drug response in pediatric high-grade glioma.

He Chen C   Xu Ke K   Zhu Xiaoyan X   Dunphy Paige S PS   Gudenas Brian B   Lin Wenwei W   Twarog Nathaniel N   Hover Laura D LD   Kwon Chang-Hyuk CH   Kasper Lawryn H LH   Zhang Junyuan J   Li Xiaoyu X   Dalton James J   Jonchere Barbara B   Mercer Kimberly S KS   Currier Duane G DG   Caufield William W   Wang Yingzhe Y   Xie Jia J   Broniscer Alberto A   Wetmore Cynthia C   Upadhyaya Santhosh A SA   Qaddoumi Ibrahim I   Klimo Paul P   Boop Frederick F   Gajjar Amar A   Zhang Jinghui J   Orr Brent A BA   Robinson Giles W GW   Monje Michelle M   Freeman Iii Burgess B BB   Roussel Martine F MF   Northcott Paul A PA   Chen Taosheng T   Rankovic Zoran Z   Wu Gang G   Chiang Jason J   Tinkle Christopher L CL   Shelat Anang A AA   Baker Suzanne J SJ  

Nature communications 20210702 1


Pediatric high-grade glioma (pHGG) is a major contributor to cancer-related death in children. In vitro and in vivo disease models reflecting the intimate connection between developmental context and pathogenesis of pHGG are essential to advance understanding and identify therapeutic vulnerabilities. Here we report establishment of 21 patient-derived pHGG orthotopic xenograft (PDOX) models and eight matched cell lines from diverse groups of pHGG. These models recapitulate histopathology, DNA met  ...[more]

Similar Datasets

2020-12-09 | GSE152035 | GEO
| S-EPMC8980497 | biostudies-literature
| S-EPMC8972292 | biostudies-literature
| S-EPMC9353492 | biostudies-literature
| PRJNA638139 | ENA
| S-EPMC10673884 | biostudies-literature
| S-EPMC10339991 | biostudies-literature
| S-EPMC10701620 | biostudies-literature
| S-EPMC9133464 | biostudies-literature
| S-EPMC10879747 | biostudies-literature