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An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.


ABSTRACT: Serial femtosecond crystallography has opened up many new opportunities in structural biology. In recent years, several approaches employing light-inducible systems have emerged to enable time-resolved experiments that reveal protein dynamics at high atomic and temporal resolutions. However, very few enzymes are light-dependent, whereas macromolecules requiring ligand diffusion into an active site are ubiquitous. In this work we present a drop-on-drop sample delivery system that enables the study of enzyme-catalyzed reactions in microcrystal slurries. The system delivers ligand solutions in bursts of multiple picoliter-sized drops on top of a larger crystal-containing drop inducing turbulent mixing and transports the mixture to the X-ray interaction region with temporal resolution. We demonstrate mixing using fluorescent dyes, numerical simulations and time-resolved serial femtosecond crystallography, which show rapid ligand diffusion through microdroplets. The drop-on-drop method has the potential to be widely applicable to serial crystallography studies, particularly of enzyme reactions with small molecule substrates.

SUBMITTER: Butryn A 

PROVIDER: S-EPMC8298390 | biostudies-literature | 2021 Jul

REPOSITORIES: biostudies-literature

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An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography.

Butryn Agata A   Simon Philipp S PS   Aller Pierre P   Hinchliffe Philip P   Massad Ramzi N RN   Leen Gabriel G   Tooke Catherine L CL   Bogacz Isabel I   Kim In-Sik IS   Bhowmick Asmit A   Brewster Aaron S AS   Devenish Nicholas E NE   Brem Jürgen J   Kamps Jos J A G JJAG   Lang Pauline A PA   Rabe Patrick P   Axford Danny D   Beale John H JH   Davy Bradley B   Ebrahim Ali A   Orlans Julien J   Storm Selina L S SLS   Zhou Tiankun T   Owada Shigeki S   Tanaka Rie R   Tono Kensuke K   Evans Gwyndaf G   Owen Robin L RL   Houle Frances A FA   Sauter Nicholas K NK   Schofield Christopher J CJ   Spencer James J   Yachandra Vittal K VK   Yano Junko J   Kern Jan F JF   Orville Allen M AM  

Nature communications 20210722 1


Serial femtosecond crystallography has opened up many new opportunities in structural biology. In recent years, several approaches employing light-inducible systems have emerged to enable time-resolved experiments that reveal protein dynamics at high atomic and temporal resolutions. However, very few enzymes are light-dependent, whereas macromolecules requiring ligand diffusion into an active site are ubiquitous. In this work we present a drop-on-drop sample delivery system that enables the stud  ...[more]

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