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Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro.


ABSTRACT: The endometrium, the mucosal lining of the uterus, undergoes dynamic changes throughout the menstrual cycle in response to ovarian hormones. We have generated dense single-cell and spatial reference maps of the human uterus and three-dimensional endometrial organoid cultures. We dissect the signaling pathways that determine cell fate of the epithelial lineages in the lumenal and glandular microenvironments. Our benchmark of the endometrial organoids reveals the pathways and cell states regulating differentiation of the secretory and ciliated lineages both in vivo and in vitro. In vitro downregulation of WNT or NOTCH pathways increases the differentiation efficiency along the secretory and ciliated lineages, respectively. We utilize our cellular maps to deconvolute bulk data from endometrial cancers and endometriotic lesions, illuminating the cell types dominating in each of these disorders. These mechanistic insights provide a platform for future development of treatments for common conditions including endometriosis and endometrial carcinoma.

SUBMITTER: Garcia-Alonso L 

PROVIDER: S-EPMC8648563 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature

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Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro.

Garcia-Alonso Luz L   Handfield Louis-François LF   Roberts Kenny K   Nikolakopoulou Konstantina K   Fernando Ridma C RC   Gardner Lucy L   Woodhams Benjamin B   Arutyunyan Anna A   Polanski Krzysztof K   Hoo Regina R   Sancho-Serra Carmen C   Li Tong T   Kwakwa Kwasi K   Tuck Elizabeth E   Lorenzi Valentina V   Massalha Hassan H   Prete Martin M   Kleshchevnikov Vitalii V   Tarkowska Aleksandra A   Porter Tarryn T   Mazzeo Cecilia Icoresi CI   van Dongen Stijn S   Dabrowska Monika M   Vaskivskyi Vasyl V   Mahbubani Krishnaa T KT   Park Jong-Eun JE   Jimenez-Linan Mercedes M   Campos Lia L   Kiselev Vladimir Yu VY   Lindskog Cecilia C   Ayuk Paul P   Prigmore Elena E   Stratton Michael R MR   Saeb-Parsy Kourosh K   Moffett Ashley A   Moore Luiza L   Bayraktar Omer A OA   Teichmann Sarah A SA   Turco Margherita Y MY   Vento-Tormo Roser R  

Nature genetics 20211202 12


The endometrium, the mucosal lining of the uterus, undergoes dynamic changes throughout the menstrual cycle in response to ovarian hormones. We have generated dense single-cell and spatial reference maps of the human uterus and three-dimensional endometrial organoid cultures. We dissect the signaling pathways that determine cell fate of the epithelial lineages in the lumenal and glandular microenvironments. Our benchmark of the endometrial organoids reveals the pathways and cell states regulatin  ...[more]

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