Dashboard-style interactive plots for RNA-seq analysis are R Markdown ready with Glimma 2.0.

ABSTRACT: Glimma 1.0 introduced intuitive, point-and-click interactive graphics for differential gene expression analysis. Here, we present a major update to Glimma that brings improved interactivity and reproducibility using high-level visualization frameworks for R and JavaScript. Glimma 2.0 plots are now readily embeddable in R Markdown, thus allowing users to create reproducible reports containing interactive graphics. The revamped multidimensional scaling plot features dashboard-style controls allowing the user to dynamically change the colour, shape and size of sample points according to different experimental conditions. Interactivity was enhanced in the MA-style plot for comparing differences to average expression, which now supports selecting multiple genes, export opti

SUBMITTER: Kariyawasam H 

PROVIDER: S-EPMC8693569 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature