DeepTrio: a ternary prediction system for protein-protein interaction using mask multiple parallel convolutional neural networks.

ABSTRACT:

Motivation

Protein-protein interaction (PPI), as a relative property, is determined by two binding proteins, which brings a great challenge to design an expert model with an unbiased learning architecture and a superior generalization performance. Additionally, few efforts have been made to allow PPI predictors to discriminate between relative properties and intrinsic properties.

Results

We present a sequence-based approach, DeepTrio, for PPI prediction using mask multiple parallel convolutional neural networks. Experimental evaluations show that DeepTrio achieves a better performance over several state-of-the-art methods in terms of various quality metrics. Besides, DeepTrio is extended to provide additional insights into the contribution of each input neuron to the predict

SUBMITTER: Hu X 

PROVIDER: S-EPMC8756175 | biostudies-literature | 2022 Jan

REPOSITORIES: biostudies-literature