Using Evolutionary Analyses to Refine Whole-Genome Sequence Match Criteria.
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ABSTRACT:
SUBMITTER: Pightling AW
PROVIDER: S-EPMC9301902 | biostudies-literature | 2022
REPOSITORIES: biostudies-literature
Publications
Using Evolutionary Analyses to Refine Whole-Genome Sequence Match Criteria.
Pightling Arthur W AW Rand Hugh H Pettengill James J
Frontiers in microbiology 20220616
Whole-genome sequence databases continue to grow. Collection times between samples are also growing, providing both a challenge for comparing recently collected sequence data to historical samples and an opportunity for evolutionary analyses that can be used to refine match criteria. We measured evolutionary rates for 22 <i>Salmonella enterica</i> serotypes. Based upon these measurements, we propose using an evolutionary rate of 1.97 single-nucleotide polymorphisms (SNPs) per year when determini ...[more]
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