Dataset Information
NMRpQuant: an automated software for large scale urinary total protein quantification by one-dimensional 1H NMR profiles.
Ontology highlight
ABSTRACT: Summary
1H nuclear magnetic resonance (NMR) spectroscopy is an established bioanalytical technology for metabolic profiling of biofluids in both clinical and large-scale population screening applications. Recently, urinary protein quantification has been demonstrated using the same 1D 1H NMR experimental data captured for metabolic profiling. Here, we introduce NMRpQuant, a freely available platform that builds on these findings with both novel and further optimized computational NMR approaches for rigorous, automated protein urine quantification. The results are validated by interlaboratory comparisons, demonstrating agreement with clinical/biochemical methodologies, pointing at a ready-to-use tool for routine protein urinalyses.Availability and implementation
NMRpQuant was developed on MATLAB programming environment. Source code and Windows/macOS compiled applications are available at https://github.com/pantakis/NMRpQuant, and working examples are available at https://doi.org/10.6084/m9.figshare.18737189.v1.Supplementary information
Supplementary data are available at Bioinformatics online.
SUBMITTER: Takis PG
PROVIDER: S-EPMC9477529 | biostudies-literature | 2022 Sep
REPOSITORIES: biostudies-literature
Publications
NMRpQuant: an automated software for large scale urinary total protein quantification by one-dimensional 1H NMR profiles.
Bioinformatics (Oxford, England) 20220901 18
<h4>Summary</h4>1H nuclear magnetic resonance (NMR) spectroscopy is an established bioanalytical technology for metabolic profiling of biofluids in both clinical and large-scale population screening applications. Recently, urinary protein quantification has been demonstrated using the same 1D 1H NMR experimental data captured for metabolic profiling. Here, we introduce NMRpQuant, a freely available platform that builds on these findings with both novel and further optimized computational NMR app ...[more]
