Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete mitochondrial genome of Pseudoglomeris magnifica (Shelford, 1907) (Insecta: Dictyoptera: Blaberidae).

ABSTRACT: Pseudoglomeris magnifica (Shelford, 1907) is bred as a pet because of its beautiful appearance. Its complete mitochondrial genome (GenBank accession number MW630139), obtained from the Manwan Town population, was characterized as the first complete mitogenome of the genus Pseudoglomeris. The mitogenome consists of a circular DNA molecule of 16,627 bp with 76.23% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one control region. The PCGs have the traditional ATN (Met) start codon, except cox1 and nad1 (which have TTG (Met) as the start codon), and are terminated by the traditional TAN stop codon.

SUBMITTER: Bai Y

PROVIDER: S-EPMC9487967 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete mitochondrial genome of Pseudoglomeris magnifica (Shelford, 1907) (Insecta: Dictyoptera: Blaberidae).

Bai Yu Y Yang Kang K Ye Lin L Gao Xuyuan X

Mitochondrial DNA. Part B, Resources 20220915 9

Pseudoglomeris magnifica (Shelford, 1907) is bred as a pet because of its beautiful appearance. Its complete mitochondrial genome (GenBank accession number MW630139), obtained from the Manwan Town population, was characterized as the first complete mitogenome of the genus Pseudoglomeris. The mitogenome consists of a circular DNA molecule of 16,627 bp with 76.23% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one control region. The PCGs ...[more]

PMID: 36147358

Similar Datasets

Phylogenetic analysis of the complete mitochondrial genome of the Japanese peacock butterfly Aglais io geisha (Stichel 1907) (Insecta: Lepidoptera: Nymphalidae).

Project description:The peacock butterfly Aglais io (Linnaeus, 1758) (Nymphalidae: Nymphalinae: Nymphalini) is a colorful and charismatic flagship butterfly species whose range spans from the British Isles and Europe through temperate Asia and the Far East. In Europe, it has been used as a model species for studying the effects of GMO maize pollen on caterpillar growth and survivorship. The Japanese subspecies, Aglais io geisha (Stichel 1907), is not as well studied as its European counterpart. Genome skimming by Illumina sequencing allowed the assembly of a complete circular mitochondrial genome (mitogenome) of 15,252 bp from A. io geisha consisting of 80.6% AT nucleotides, 13 protein-coding genes, 22 tRNAs, two rRNAs, and a control region in the gene order typical of butterfly species. Aglais io geisha COX1 gene features an atypical start codon (CGA) while COX1, COX2, CYTB, ND1, ND3, ND4, and ND5 display incomplete stop codons finished by the addition of 3' A residues to the mRNA. Bayesian phylogenetic reconstruction places A. io geisha within a clade with European A. io mitogenomes in the tribe Nymphalini, which is consistent with previous phylogenetic hypotheses.

| S-EPMC8477945 | biostudies-literature

Complete genome sequence of Candidatus Ruthia magnifica.

Project description:The hydrothermal vent clam Calyptogena magnifica (Bivalvia: Mollusca) is a member of the Vesicomyidae. Species within this family form symbioses with chemosynthetic Gammaproteobacteria. They exist in environments such as hydrothermal vents and cold seeps and have a rudimentary gut and feeding groove, indicating a large dependence on their endosymbionts for nutrition. The C. magnifica symbiont, Candidatus Ruthia magnifica, was the first intracellular sulfur-oxidizing endosymbiont to have its genome sequenced (Newton et al. 2007). Here we expand upon the original report and provide additional details complying with the emerging MIGS/MIMS standards. The complete genome exposed the genetic blueprint of the metabolic capabilities of the symbiont. Genes which were predicted to encode the proteins required for all the metabolic pathways typical of free-living chemoautotrophs were detected in the symbiont genome. These include major pathways including carbon fixation, sulfur oxidation, nitrogen assimilation, as well as amino acid and cofactor/vitamin biosynthesis. This genome sequence is invaluable in the study of these enigmatic associations and provides insights into the origin and evolution of autotrophic endosymbiosis.

| S-EPMC3035367 | biostudies-literature

The complete mitochondrial genome of a medical important wasp, Vespa magnifica (Hymenoptera, Vespidae).

Project description:Vespa magnifica (Smith) is an aggressive social wasp species of Vespidae family. This species is of medical importance for its dangerous sting, traditional medicinal use and valuable venom components. Here, a complete mitogenome of V. magnifica was presented. It was 16,730 bp in length with nucleotide composition of AT: 79.4% and CG: 20.6%. In total, 13 protein-coding genes (PCGs), 22 transfer RNA, and two ribosomal RNA genes were annotated in this mitogenome. Phylogenetic analysis was performed using V. magnifica with 20 other species of Vespidae. The result indicated those species of genus Vespa fell into a paraphyletic group. Moreover, the Vespa species with large body size were clustered into a clade. This mitogenome resource can contribute to further phylogenetic and taxonomic study on genus Vespa.

| S-EPMC8725949 | biostudies-literature

The blattodeas.s. (Insecta, dictyoptera) of the Guiana shield.

Project description:Here we provide a checklist of cockroach species known from areas within the Guiana Shield based on literature records and new field collection. We give records of sixteen species collected in Guyana, eight of which are new records for Guyana and one of which is a new generic record for the entire Guiana Shield. We also provide a description for a geographically disparate species of Calhypnorna Stal, and the new species Xestoblattaberenbaumae. The complete checklist contains 234 species of Blattodeas.s. currently known in the shield. This checklist shows particularly low richness in Guianan Venezuela, Roraima and Amapa Brazil, but this is likely an artifact due to under-sampling. Indeed, based on previously published data and current fieldwork, we believe that most regions of the Guiana Shield are under-sampled for cockroaches. Despite this, French Guiana (151 spp.) and Suriname (136 spp.) rank as the second and sixth most species dense faunas of cockroaches in the neotropics.

| S-EPMC4311699 | biostudies-literature

Species delimitation and DNA barcoding for Chinese Mantodea (Insecta, Dictyoptera).

Project description:DNA barcoding has been proposed as a rapid and reliable tool for animal identification and species delineation. The 5' end of the mitochondrial cytochrome c oxidase I gene (COI-5P) was sequenced for 318 specimens of 55 mantis species. Of these, 44 species had not been sequenced before, thus being new COI-5P barcode sequences to science. Another 61 COI-5P barcode sequences comprising five species were retrieved from the Barcode of Life Database (BOLD; www.boldsystems.org). Five species delimitation algorithms were employed to sort barcode sequences into Molecular Operational Taxonomic Units (MOTUs), namely the distance-based Barcode Index Number (BIN) System, Generalized Mixed Yule Coalescent (GMYC), a Java program that uses an explicit, determinate algorithm to define Molecular Operational Taxonomic Unit (jMOTU), Assemble Species by Automatic Partitioning (ASAP), and Bayesian implementation of the Poisson Tree Processes model (bPTP). All species, except Hierodulachinensis Werner, 1929, were recovered as monophyletic on the neighbor-joining (NJ) tree. For the final dataset, 379 COI-5P barcode sequences were assigned to 68 BINs. Fifty-five out of 68 BINs obtained were new to BOLD. The low level of BIN overlap with other nations highlights the importance of constructing a regional DNA barcode reference library. The algorithms ASAP, jMOTU, bPTP, and GMYC clustered barcode sequences into 32, 58, 68, and 60 MOTUs, respectively. All species delimitation algorithms (except ASAP analysis) split Anaxarchasinensis Beier, 1933, Anaxarchazhengi Ren & Wang, 1994, H.chinensis, Spilomantisoccipitalis (Westwood, 1889), Titanodulaformosana Giglio-Tos, 1912 into more than one MOTUs. All algorithms merged Hierodula sp. BCM-2019 and H.chinensis into the same MOTU, as for Tenoderaaridifolia Stoll, 1813 and Tenoderasinensis Saussure, 1871. More accurate identification results need to be supplemented by detailed morphological classification.

| S-EPMC11876984 | biostudies-literature

The complete mitochondrial genome of Apis mellifera meda (Insecta: Hymenoptera: Apidae).

Project description:The complete mitochondrial genome of the western honey bee subspecies Apis mellifera meda was sequenced. This mitochondrial genome is 16,248 bp in length, with 37 classical eukaryotic mitochondrial genes and an A + T-rich region. Gene direction and arrangement are similar to those of other Apis mitogenomes. All genes initiate with ATT (six genes), ATG (four genes), ATA (two genes), and ATC (one gene) start codons and terminate with a TAA stop codon. Four genes are encoded on the heavy and nine on the light strands, respectively. All of the 22 tRNA genes, ranging from 66 to 78 bp, have a typical cloverleaf structure. The complete mitogenome of A.m. meda provides information on the biogeography and evolution of A. mellifera subspecies.

| S-EPMC7800517 | biostudies-literature

Complete mitochondrial genome of Morphostenophanes sinicus (Zhou, 2020) (Insecta: Coleoptera: Tenebrionidae).

Project description:The genus Morphostenophanes is a small arboreal group of darkling beetles that are endemic to the Oriental region. The complete mitochondrial genome of the M. sinicus population from the Manwan Town was first characterized. The mitogenome consisted of a circular DNA molecule of 15,662 bp with a 66.352% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. The PCGs have a typical ATN (Met) start codon, except for nad1 (TTG as a start codon), and are terminated by typical TAN stop codons.

| S-EPMC8451664 | biostudies-literature

Complete mitochondrial genome of Promethis valgipes valgipes (Marseul) (Insecta: Coleoptera: Tenebrionidae).

Project description:Promethis valgipes valgipes (Marseul) is one of the important fungus-eating beetle distributed in central China, Korea, and Japan. Beetles were obtained from Pizhou City and the species' mitochondrial genome was characterized (GenBank accession number MW201671). The mitogenome consists of a circular DNA molecule of 15,801 bp, with 68.51% AT content. It comprises 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes. The PCGs have typical ATN (Met) start codons, except nad1 (TTG as start codon), and are terminated by typical TAN stop codons.

| S-EPMC7889183 | biostudies-literature

The complete mitochondrial genome of the Xizang hot-spring snake, Thermophis baileyi Wall, 1907 (Reptilia, colubridae).

Project description:The Xizang hot-spring snake, Thermophis baileyi (Reptilia, Colubridae), is a relict species of the family Colubridae, which is known only from Tibet, China. In this study, we report the complete mitochondrial genome of this species. The total length of the genome is 17,385 bp, and comprises 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and 2 control regions. The total base composition is 32.5% for A, 23.8% for T, 13.5% for G, and 30.2% for C. The phylogenetic tree with 13 protein-coding genes (PCGs) of T. baileyi together with 12 other closely related species belonging to the family Colubridae was built, in order to prove the validity of the mitogenome of T. baileyi.

| S-EPMC7800217 | biostudies-literature

The complete mitochondrial genome of a field cricket Turanogryllus eous (Insecta: Orthoptera).

Project description:The complete mitochondrial genome (mitogenome) of a field cricket Turanogryllus eous Bey-Bienko, 1956 was determined using next-generation sequencing. The mitogenome was 16,045 bp in length comprising 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a control region. Relative to the ancestral insect gene order, T. eous possessed an inversion of trnN-trnS1-trnE. The control region contained 3.4 tandem copies of a 194-bp sequence. Phylogenetic analysis supported that T. eous was sister to the clade comprising Teleogryllus and Velarifictorus. This study provides essential genetic information for genetic diversity analysis of T. eous.

| S-EPMC7707795 | biostudies-literature