Dataset Information
Sparse allele vectors and the savvy software suite.
Ontology highlight
ABSTRACT: Summary
The sparse allele vectors file format is an efficient storage format for large-scale DNA variation data and is designed for high throughput association analysis by leveraging techniques for fast deserialization of data into computer memory. A command line interface has been developed to complement the storage format and supports basic features like importing, exporting and subsetting. Additionally, a C++ programming API is available allowing for easy integration into analysis software.Availability and implementation
https://github.com/statgen/savvy.Supplementary information
Supplementary data are available at Bioinformatics online.
SUBMITTER: LeFaive J
PROVIDER: S-EPMC9502232 | biostudies-literature | 2021 Nov
REPOSITORIES: biostudies-literature
Publications
Sparse allele vectors and the savvy software suite.
Bioinformatics (Oxford, England) 20211101 22
<h4>Summary</h4>The sparse allele vectors file format is an efficient storage format for large-scale DNA variation data and is designed for high throughput association analysis by leveraging techniques for fast deserialization of data into computer memory. A command line interface has been developed to complement the storage format and supports basic features like importing, exporting and subsetting. Additionally, a C++ programming API is available allowing for easy integration into analysis sof ...[more]