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Inactivation of SARS-CoV-2 in clinical exhaled breath condensate samples for metabolomic analysis.


ABSTRACT: Exhaled breath condensate (EBC) is routinely collected and analyzed in breath research. Because it contains aerosol droplets, EBC samples from SARS-CoV-2 infected individuals harbor the virus and pose the threat of infectious exposure. We report for the first time a safe and consistent method to fully inactivate SARS-CoV-2 in EBC samples and make EBC samples safe for processing and analysis. EBC samples containing infectious SARS-CoV-2 were treated with several concentrations of acetonitrile. The most commonly used 10% acetonitrile treatment for EBC processing failed to completely inactivate the virus in samples and viable virus was detected by the assay of SARS-CoV-2 infection of Vero E6 cells in a biosafety level 3 laboratory. Treatment with either 50% or 90% acetonitrile was effective to completely inactivate the virus, resulting in safe, non-infectious EBC samples that can be used for metabolomic analysis. Our study provides SARS-CoV-2 inactivation protocol for the collection and processing of EBC samples in the clinical setting and for advancing to metabolic assessments in health and disease.

SUBMITTER: Hu S 

PROVIDER: S-EPMC9809239 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature

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Inactivation of SARS-CoV-2 in clinical exhaled breath condensate samples for metabolomic analysis.

Hu Shuang S   McCartney Mitchell M MM   Arredondo Juan J   Sankaran-Walters Sumathi S   Borras Eva E   Harper Richart W RW   Schivo Michael M   Davis Cristina E CE   Kenyon Nicholas J NJ   Dandekar Satya S  

Journal of breath research 20211220 1


Exhaled breath condensate (EBC) is routinely collected and analyzed in breath research. Because it contains aerosol droplets, EBC samples from SARS-CoV-2 infected individuals harbor the virus and pose the threat of infectious exposure. We report for the first time a safe and consistent method to fully inactivate SARS-CoV-2 in EBC samples and make EBC samples safe for processing and analysis. EBC samples containing infectious SARS-CoV-2 were treated with several concentrations of acetonitrile. Th  ...[more]

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