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Pereira2020 - Discovering growth Inhibitors of Neisseria gonorrhoeae with Machine Learning


ABSTRACT:

The authors curated a dataset of 282 compounds from ChEMBL, of which 160 (56.7%) were labeled as active N. gonorrhoeae inhibitor compounds. They used this dataset to build a naïve Bayesian model and used it to screen a commercial library. With this method,they identified and validated two hits compound.

Model Type: Predictive machine learning model.
Model Relevance: The model predicts the probability of activity for the inhibition of the Antimicrobial pathogen N. gonorrhoeae.
Model Encoded by: Sarima Chiorlu (Ersilia)
Metadata Submitted in BioModels by: Zainab Ashimiyu-Abdusalam

Implementation of this model code by Ersilia is available here:
https://github.com/ersilia-os/eos5cl7

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ORGANISM(S): Neisseria gonorrhoeae

SUBMITTER: Zainab Ashimiyu-Abdusalam 

PROVIDER: MODEL2405080003 | biostudies-other |

SECONDARY ACCESSION(S): 32661900

REPOSITORIES: biostudies-other

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Publications

Machine Learning Platform to Discover Novel Growth Inhibitors of Neisseria gonorrhoeae.

Pereira Janaina Cruz JC   Daher Samer S SS   Zorn Kimberley M KM   Sherwood Matthew M   Russo Riccardo R   Perryman Alexander L AL   Wang Xin X   Freundlich Madeleine J MJ   Ekins Sean S   Freundlich Joel S JS  

Pharmaceutical research 20200713 7


<h4>Purpose</h4>To advance fundamental biological and translational research with the bacterium Neisseria gonorrhoeae through the prediction of novel small molecule growth inhibitors via naïve Bayesian modeling methodology.<h4>Methods</h4>Inspection and curation of data from the publicly available ChEMBL web site for small molecule growth inhibition data of the bacterium Neisseria gonorrhoeae resulted in a training set for the construction of machine learning models. A naïve Bayesian model for b  ...[more]

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