PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data.

ABSTRACT: The Polyomics integrated Metabolomics Pipeline (PiMP) fulfils an unmet need in metabolomics data analysis. PiMP offers automated and user-friendly analysis from mass spectrometry data acquisition to biological interpretation. Our key innovations are the Summary Page, which provides a simple overview of the experiment in the format of a scientific paper, containing the key findings of the experiment along with associated metadata; and the Metabolite Page, which provides a list of each metabolite accompanied by 'evidence cards', which provide a variety of criteria behind metabolite annotation including peak shapes, intensities in different sample groups and database information.PiMP is available at http://polyomics.mvls.gla.ac.uk, and access is freely available on request. 50?GB of space is allocated for data storage, with unrestricted number of samples and analyses per user. Source code is available at https://github.com/RonanDaly/pimp and licensed under the [e-mail] data are available at Bioinformatics online.

SUBMITTER: Gloaguen Y 

PROVIDER: S-EPMC5860087 | biostudies-other | 2017 Dec

REPOSITORIES: biostudies-other