ABSTRACT: The dataset contains the targeted sequencing (TS) and the whole genome low pass (WGS) BAM files of the study.
For the TS:
Samples: TS_XXX
There are normal and tumor DNA samples.
Each DNA strand has been sequenced independently (PoolA and PoolB).
A TruSeq Custom Amplicon panel of 20 genes frequently mutated in ILC and/or ER-positive BC in general was designed using DesignStudio from Illumina: AKT1, ARID1A, CDH1, ERBB2, ERBB3, ESR1, FOXA1, GATA3, IGF1R, JAK2, MAP2K4, MAP3K1, NF1, PIK3CA, PTEN, RB1, RUNX1, STAT3, TBX3, and, TP53.
For the WGS:
Samples: WGS_XXX
There are normal and tumor DNA samples.
Samples were sequenced to an average target coverage of 0.5X.
