Project description:1075 members of the Lothian Birth Cohort 1936 (LBC1936) were sequenced using the Illumina HiSeq X platform. The LBC1936 are a relatively healthy cohort of 1091 individuals who underwent cognitive and medical testing at a mean age of 69.5 (SD=0.8) years. They have since undergone four further waves of testing, approximately three years apart.

| EGAS00001003819 | EGA

Single-cell RNA sequencing of Lung Squamous Cell Carcinoma Assosciated with Idiopathic Pulmonary Fibrosis

Project description:This dataset contains single-cell RNA sequencing (scRNA-seq) data from two patients with lung squamous cell carcinoma (LUSC) associated with idiopathic pulmonary fibrosis (IPF). Tumor and adjacent lung tissues (within and outside UIP lesions) from two patients were snap-frozen, fixed, and processed using the 10x Genomics Chromium Fixed RNA Profiling workflow. Libraries were sequenced on an Illumina NovaSeq 6000 platform and processed using Cell Ranger (10x Genomics).

2026-03-02 | GSE305872 | GEO

Short reads used for de novo assembly of Norovirus samples

Project description:Collection of reads sequenced using the Illumina MiSeq platform of Norovirus positive samples

| PRJEB4318 | ENA

RNA-seq of human ovarian clear cell carcinoma PDX tumors

Project description:This dataset contains RNA-seq profiles of patient-derived xenograft (PDX) tumors established from human ovarian clear cell carcinoma (OCCC). Tumor tissues were collected without any therapeutic treatment and used to generate xenografts in immunodeficient mice. Total RNA was extracted from the PDX tumors and sequenced on the Illumina NovaSeq 6000 platform using 150 bp paired-end reads. These data represent the baseline transcriptomic landscape of OCCC tumors and may serve as a resource for studying tumor biology and preclinical model characterization.

2025-12-15 | GSE298088 | GEO

Transcriptome profiling of medaka timecourse embryonic samples and adult tissues samples.

Project description:We collected ten embryonic stages covering cleavage, blastula, gastrula, somite, and late stages until hatching. We also collected two adult tissue samples, including ovary and testis. 13 samples were sequenced using the illumina short-read sequencing platform.

2020-06-16 | GSE136018 | GEO

Next Generation Sequencing profile of leukemia from distinct cells-of-origin [ATAC-seq profiles]

Project description:The goal of this study is to identify genomic signatures predicitve of cell-of-origin in acute myeloid leukemia Cryopreserved leukemic bone marrow samples were thawed, and 50,000 bulk leukemia (GFP+) cells were sorted by FACSAria (BD). Samples were placed at 37oC and 5% CO2 in IMDM plus 10% fetal calf serum for 30 minutes, then harvested, washed with 1X PBS, and ATAC-seq libraries were prepared. Quantitative PCR using the Library Quantitation kit (Kapa Biosystems) was used to estimate library concentrations. Libraries were sequenced on the Illumina HiSeq 2000 platform generating 2x150bp paired end reads at a sequencing depth of ~30-50 million reads per sample. Libraries were sequenced on the Illumina HiSeq 2000 platform.

2016-07-12 | GSE74688 | GEO

Transcriptome analysis of Opium poppy using Illumina HiSeq X Ten platform

Project description:Transcriptome analysis of Opium poppy using Illumina HiSeq X Ten platform

| PRJNA531829 | ENA