Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Global mRNA decay in Gluconobacter oxydans 621H

ABSTRACT: In this study we conducted genome-wide mRNA decay analysis to get further insights into the physiology of Gluconobacter oxydans.

ORGANISM(S): Gluconobacter oxydans 621H Escherichia coli Corynebacterium glutamicum Gluconobacter oxydans Bacillus subtilis subsp. subtilis str. 168

PROVIDER: GSE103428 | GEO | 2018/09/21

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Gluconobacter oxydans 621H

Project description:Global mRNA decay in Gluconobacter oxydans 621H

| PRJNA401791 | ENA

Transcriptome response of Gluconobacter oxydans against five typical aldehyde inhibitors

Project description:Toxic inhibitory compounds from lignocellulose pretreatment are the major obstacle to achieve high bioconversion efficiency in biorefinery fermentations. This study shows a unique glucose oxidation catalysis of Gluconobacter oxydans with its gluconic acid productivity free of inhibitor disturbance. The microbial experimentations and the transcriptome analysis revealed that both the activity of the membrane-bound glucose dehydrogenase (mGDH) and the transcription level of the genes in periplasmic glucose oxidation respiratory chain of G. oxydans were essentially not affected under the existence of inhibitory compounds. G. oxydans also rapidly converted furan and phenolic aldehyde inhibitors into the less toxic alcohols or acids. The synergy of the robust periplasmic glucose oxidation and the rapid inhibitor conversion of G. oxydans significantly elevated the efficiency of the oxidative fermentation in lignocellulose hydrolysate. The corresponding genes responsible for the conversion of furan and phenolic aldehyde inhibitors were also mined by DNA microarrays. The synergistic mechanism of G. oxydans provided an important option of metabolic modification for enhancing inhibitor tolerance of general fermentation strains.

2019-01-29 | GSE125739 | GEO

Gluconobacter oxydans

Project description:Gluconobacter oxydans Raw sequence reads

| PRJNA299470 | ENA

Gluconobacter oxydans H24

Project description:Gluconobacter oxydans H24 Genome sequencing

| PRJNA173388 | ENA

Comparison of global gene expression in the Gluconobacter oxydans DgoxR mutant and the parental strain by RNA-Seq

Project description:Gene expression in the obligatory aerobic acetic acid bacterium Gluconobacter oxydans was shown to respond to oxygen limitation, but the regulators involved are unknown. In this study, we analyzed the function of a transcriptional regulator named GoxR, which belongs to the FNR family. Here, we aplied RNAseq to identify target genes of GoxR by comparing genes expression of a delta-goxR and its parental strain after 20 min of oxygen limitation.

2021-03-11 | GSE147810 | GEO

Gluconobacter oxydans strain:1.637

Project description:Gluconobacter oxydans 1.637 genome

| PRJNA326036 | ENA

Global mRNA decay and 23S rRNA fragmentation in Gluconobacter oxydans 621H.

Project description: Not available

| S-EPMC6191907 | biostudies-literature

Gluconobacter oxydans DSM 3504

Project description:Gluconobacter oxydans DSM 3504 Genome sequencing

| PRJNA188081 | ENA

Gluconobacter oxydans DSM 2003

Project description:Gluconobacter oxydans DSM 2003 Genome sequencing