Genomics

Dataset Information

39

Simultaneous control of non-coding RNA on the G2/M phase of the cell cycle in hepatocellular carcinoma [miRNA]


ABSTRACT: The differential ncRNA and mRNA expression profile was compared between hepatocellular carcinoma and paracancerous normal tissues by microarray We use microarray to detail the gene expression of hepatocellular carcinoma and paracancerous normal tissues and Identify differentially expressed genes Overall design: The tissues from hepatocellular carcinoma and paracancerous were selected RNA extraction and hybriduzation on Affymetrix miRNA arrays. We sought to Investigate the interaction of non-coding RNAs in hepatocellular carcinoma The para-cancerous tissue comes from the same patient as the tumor sample. For example, sample id Ca2 is the tumor sample, Ca2p is the the para-cancerous tissue and Ca2 and Ca2p come from the same patient 2.

INSTRUMENT(S): [miRNA-4] Affymetrix Multispecies miRNA-4 Array [ProbeSet ID version]

SUBMITTER: Guangqiang Ye  

PROVIDER: GSE115016 | GEO | 2018-05-30

REPOSITORIES: GEO

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Publications

Coordinative control of G2/M phase of the cell cycle by non-coding RNAs in hepatocellular carcinoma.

Shi Jun J   Ye Guangqiang G   Zhao Guoliang G   Wang Xuedong X   Ye Chunhui C   Thammavong Keooudone K   Xu Jing J   Dong Jiahong J  

PeerJ 20181016


<h4>Objective</h4>To investigate the interaction of non-coding RNAs (ncRNAs) in hepatocellular carcinoma.<h4>Methods</h4>We compared the ncRNAs and mRNAs expression profiles of hepatocellular carcinoma and adjacent tissue by microarray and RT-PCR. The relationship between different ncRNAs and mRNA was analyzed using bioinformatics tools. A regulatory model of ncRNAs in hepatocellular carcinoma cells was developed.<h4>Results</h4>A total of 1,704 differentially expressed lncRNAs, 57 miRNAs, and 2  ...[more]

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