A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
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ABSTRACT: Transcriptome of HEK and B cells were analyzed by microarray and RNA-Seq parallely. Both platforms were then compared in terms of sensitivity. To assess whether values were a reliable indicator of gene activity, we correlated these values with hypophosphorylated RNA polymerase II (PolIIa) occupancy, used as a landmark of transcription initiation. For HEK, we identified PolIIa islands by chromatin immunoprecipitation and sequencing (ChIP-Seq).
ORGANISM(S): Homo sapiens
PROVIDER: GSE11892 | GEO | 2008/07/03
SECONDARY ACCESSION(S): PRJNA105719
REPOSITORIES: GEO
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