Transcriptomics,Genomics

Dataset Information

32

Gene expression profiles of isogenic single-cell derived clones of BRAF-mutated SK-MEL-5 melanoma cell lines


ABSTRACT: We recently reported that single-cell derived isogenic subclones of SKMEL5 cells have differential initial sensitivity to BRAF-inhibitors. In order to probe differences among these subclones, we selected three subclones with unique drug responses: progressing (SK-MEL-5 SC10), stationary (SK-MEL-5 SC07), and regressing (SK-MEL-5 SC01) and performed RNASeq. This study examines differentially expressed genes (DEGs) among the subclones to identify the molecular basis for initial differences in drug sensitivity. Overall design: Transcriptomics analysis between single-cell derived isogenic subclones of BRAF-mutated melanoma cell line, SK-MEL-5

INSTRUMENT(S): Illumina HiSeq 3000 (Homo sapiens)

SUBMITTER: Bishal Paudel  

PROVIDER: GSE122041 | GEO | 2018-11-01

REPOSITORIES: GEO

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