Transcriptomics

Dataset Information

34

Positive fluorescent selection permits precise, rapid and in-depth over-expression analysis in plant protoplasts


ABSTRACT: Transient genetic modification of plant protoplasts is a straightforward and rapid technique for the analysis of numerous aspects of plant biology. One drawback in the analysis of transformed protoplast suspensions is that they are a heterogeneous mix of cells that have and have not been successfully transfected. To overcome this problem, we have developed a system that employs a fluorescent positive selection marker in combination with flow cytometric analysis as well as fluorescence activated cell sorting (FACS) to isolate responses in the transfected protoplasts exclusively. This recombinase-compatible system enables high-throughput screening of genetic circuitry. Moreover, the use of FACS allows in depth downstream analysis. Lastly, over-expression is an effective means to dissect regulatory networks, especially where redundancy exists. Here, this system has been applied to the study of auxin signaling in order to investigate reporter gene activation and genome-wide transcriptional changes in response to manipulation of the auxin-response network. We have transiently over-expressed dominant negative mutant isoforms of Aux/IAA transcription factors (IAA7mII and IAA19mII; Tiwari et al., 2001) in Arabidopsis Pwer::GFP root protoplasts, making use of a RFP fluorescent positive selection marker and FACS to isolate the dually labeled (IAAnmII expressing and Pwer::GFP-positive) cells. We have compared the transcriptional differences between an empty vector control, IAA7mII and IAA19mII protoplasts that had either been treated with 5microM IAA or mock-treated for 3 hours. Keywords: hormone treatment, genetic modification Overall design: 18 samples with 3 replicates for each condition and transformation vector: 3x empty vector mock treated, 3x empty vector IAA treated, 3x IAA7mII over-expressor mock treated, 3x IAA7mII over-expressor IAA treated, 3x IAA19mII over-expressor mock treated and 3x IAA19mII over-expressor IAA treated.

REANALYSED by: GSE118579GSE119128

INSTRUMENT(S): [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Kenneth David Birnbaum  

PROVIDER: GSE13783 | GEO | 2009-03-01

SECONDARY ACCESSION(S): PRJNA110613

REPOSITORIES: GEO

Similar Datasets

2009-03-07 | E-GEOD-13783 | ArrayExpress
2014-07-03 | E-GEOD-13783 | ExpressionAtlas
2009-10-01 | GSE17523 | GEO
2013-08-06 | E-GEOD-35580 | ArrayExpress
| GSE35580 | GEO
2010-06-09 | E-GEOD-627 | ArrayExpress
2017-06-14 | PXD004027 | Pride
2011-04-01 | BIOMD0000000352 | BioModels
2012-04-05 | BIOMD0000000413 | BioModels
2012-04-05 | BIOMD0000000414 | BioModels