Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRNA sequencing from Arabidopsis mutants and transgenic plants in the Col-0 accession

ABSTRACT: We sequenced the mRNA of Arabidopsis mutants and transgenic plants with modified RTL genes

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE142272 | GEO | 2019/12/19

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Transgenic Ah24-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic line overexpressing Ah24 gene from Amaranthus hypochondriacus.

2015-06-26 | GSE70272 | GEO

Transgenic AhDGR-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic line overexpressing AhDGR gene from Amaranthus hypochondriacus.

2016-11-30 | GSE84726 | GEO

Transgenic AhNF-YC-OE vs Wild type Col 0 Arabidopsis plants

2015-07-14 | GSE70861 | GEO

Expression profiles of MicroRNA and SiRNA of Arabidopsis thaliana Col-0 and transgenic plants

2008-05-24 | GSE11535 | GEO

mRNA sequencing from Arabidopsis mutants and transgenic plants in the Col-0 accession

Project description:mRNA sequencing from Arabidopsis mutants and transgenic plants in the Col-0 accession

| PRJNA596449 | ENA

Transgenic Ah24-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic line overexpressing Ah24 gene from Amaranthus hypochondriacus. One-condition experiment WT vs Ah24 OE plant leaves.

2015-06-26 | E-GEOD-70272 | biostudies-arrayexpress

Transgenic AhNF-YC-OE vs Wild type Col 0 Arabidopsis plants

Project description:Transcriptional profiling of Arabidopsis rossette leaves comparing WT Col-0 with a transgenic lines overexpressing AhNF-YC gene from Amaranthus hypochondriacus in three different conditions. Three-condition experiment WT vs AhNF-YC OE plant leaves. The analyzed conditions were: normal growth conditions, water stress for 5 days and 24 hrs of recovery after normal watering was reestablished to 8-day water stressed plants.

2015-07-14 | E-GEOD-70861 | biostudies-arrayexpress

Transcriptome in WT Col-0 and RLK7ECD-MIK2TK transgenic plants upon PIP1 treatment

Project description:We tested PIP1-regulated gene transcription in Arabidopsis Wt (Col-0) and RLK7ECD-MIK2TK transformats (RM).

2021-03-01 | GSE159580 | GEO

Genome-wide expression analysis of Arabidopsis Col-0 plants under different air humidity

Project description:The goal of this study is to demonstrate the global expression profile of Arabidopsis Col-0 wild type plant leaves in response to low, moderate and high humidity.

2023-10-17 | GSE236463 | GEO

Expression profiles of MicroRNA and SiRNA of Arabidopsis thaliana Col-0 and transgenic plants

Project description:Expression profiles of MicroRNA and SiRNA of Arabidopsis thaliana Col-0 and transgenic plants with constitutive expression of the chimeric receptors NRG1 grown at different temperature To reveal the underlying molecular mechanism of de-cosuppression with memory by high temperature in Arabidopsis, we performed the expression profiles of microRNA and SiRNA in transgenic plants with constitutive expression of the chimeric receptors NRG1 and wide type Col-0 grown at different temperature using the Custom LC Sciences Arabidopsis microRNA and SiRNA array. Keywords: high temperature, de-cosuppression, MicroRNA, SiRNA Total RNA was prepared from wild type and NRG1 plants grown at 22ºC and 30ºC for 4 weeks with TRIzol reagent according to the manufacturer’s protocol (Invitrogen). Small RNAs (<300nt) were isolated using a YM-100 Microcon centrifugal filter (Millipore), and 3’-extended with a poly(A) tail for later fluorescent dye staining. Two different tags were used for the two RNA samples labeled with Cy3 or Cy5 fluorescent dyes in dual-sample experiments. Also dye-swap experiments were carried out to control for labeling bias. Hybridization was performed overnight on a µParafloTM microfluidic chip. Each miRNA and siRNA had 6 and 3 repeat prints, respectively. Six replicate arrays were performed with six independent pairs of RNA samples. After hybridization, array images were obtained using an Axon GenePix 4000B laser scanner and digitized using the Array-Pro image software (Media Cybernetics). The data were corrected by subtracting the background and normalized using the LOWESS (locally weighted regression) method. All data calculations were performed by LC Science (Houston, TX).

2008-05-24 | E-GEOD-11535 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data