Transcriptomics,Genomics

Dataset Information

21

Arabidopsis gene expression profile : Col-0 wild-type vs. pif3pif4pil5pil6 (pifQ) mutant


ABSTRACT: Transcriptional profiling of 60h-old Arabidopsis whole seedlings comparing control Col-0 wild-type plants with pifQ mutant plants The expression profile of dark-grown pifQ mutant shows similar pattern of Rc-grown Col-0 wild-type Keywords: Genetic modification Overall design: In all cases, 60h-old dark-grown Col-0 wild-type was used as background. 2-condition experiment, Rc-grown Col-0 vs. dark-grown pifQ. Biological replicates : 3 each, was independently grown and harvested. One replicate per array.

INSTRUMENT(S): Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version)

SUBMITTER: Giltsu Choi  

PROVIDER: GSE14492 | GEO | 2009-04-23

SECONDARY ACCESSION(S): PRJNA111549

REPOSITORIES: GEO

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Publications

Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors.

Shin Jieun J   Kim Keunhwa K   Kang Hyojin H   Zulfugarov Ismayil S IS   Bae Gabyong G   Lee Choon-Hwan CH   Lee Doheon D   Choi Giltsu G  

Proceedings of the National Academy of Sciences of the United States of America 20090420 18


PIF3 is a phytochrome-interacting basic helix-loop-helix transcription factor that negatively regulates light responses, including hypocotyl elongation, cotyledon opening, and hypocotyl negative gravitropism. However, the role of PIF3 in chlorophyll biosynthesis has not been clearly defined. Here, we show that PIF3 also negatively regulates chlorophyll biosynthesis by repressing biosynthetic genes in the dark. Consistent with the gene expression patterns, the etiolated pif3 mutant accumulated a  ...[more]

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