Transcriptomics,Genomics

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A comparison between two Escherichia coli K-12 MG1655 substrains possessing different swimming motility


ABSTRACT: Substrains in Escherichia coli K-12 MG1655 can possess various swimming motility, which is mostly resulted from different expression levels of flhDC. Here, we studied the swimming motility of two MG1655 substrains, CY562 and CY570. Our results showed that CY562 had no insertion at the promoter region of flhDC and possessed no swimming motility. In contrast, CY570 had an IS-element insertion at the promoter region of flhDC and showed a hyper-motile phenotype. Transcriptomic data suggest that expression of flhDC and the other known flagella genes was much lower in CY562 than that in CY570. Moreover, CY562 possessed higher expression levels for genes involved in stress response, especially acid-stress response, than CY570. Consistently, CY562 showed a higher survival rate under acid stress than CY570. Our data indicate that there are mechanisms conversely regulating motility and stress response in E. coli. Overall design: Determination of gene expression in E. coli K-12 MG1655 substrains CY562 and CY570. Please note that each processed data file was generated from both replicates and is linked to the corresponding *-1 sample records.

INSTRUMENT(S): Illumina NovaSeq 6000 (Escherichia coli str. K-12 substr. MG1655)

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655  

SUBMITTER: Conghui You  

PROVIDER: GSE165438 | GEO | 2021-11-15

REPOSITORIES: GEO

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