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Non-microRNA Binding Competitively Inhibits LIN28 Regulation

ABSTRACT: RNA binding protein (RBP) expression is finite. For RBPs that are vastly outnumbered by their potential target sites, a simple competition for binding can set the magnitude of post-transcriptional control. Here we show that LIN28, best known for its direct regulation of let-7 miRNA biogenesis, is also indirectly regulated by its widespread binding of non-miRNA transcripts. Approximately 99% of LIN28 binding sites are found on non-miRNA transcripts, like protein coding and ribosomal RNAs. These sites are bound specifically and strongly, but they do not appear to mediate direct post-transcriptional regulation. Instead, non-miRNA sites act to sequester LIN28 protein and effectively change its functional availability, thus impeding the regulation of let-7 in cells. Together, these data show that the binding properties of the transcriptome broadly influence the ability of an RBP to mediate changes in RNA metabolism and gene expression.

ORGANISM(S): Mus musculus Homo sapiens

PROVIDER: GSE178259 | GEO | 2022/01/07

REPOSITORIES: GEO

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Non-microRNA Binding Competitively Inhibits LIN28 Regulation

Project description:Non-microRNA Binding Competitively Inhibits LIN28 Regulation

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LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance (HTS)

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Identification of mRNAs bound and regulated by human LIN28 proteins and molecular requirements for RNA recognition [Affymetrix]

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2013-02-26 | E-GEOD-44613 | biostudies-arrayexpress

LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance (splicing array)

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2013-02-26 | E-GEOD-44568 | biostudies-arrayexpress

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