Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

DBC1 is a positive regulator of enhancer epigenomic writers KMT2D and p300 [ChIP-Seq]

ABSTRACT: Genome-wide maps of H3K4me3, H3K4me1, H3K27ac, H3K9/K14ac, and H3K4ac in SW480 WT and DBC1 KO cells

ORGANISM(S): Homo sapiens

PROVIDER: GSE179461 | GEO | 2022/08/17

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

DBC1 is a positive regulator of enhancer epigenomic writers KMT2D and p300.

Project description:Genome-wide maps of DBC1, KMT2D, and p300 in SW480 WT and DBC1 KO cells

2022-08-17 | GSE202478 | GEO

DBC1 is a positive regulator of enhancer epigenomic writers KMT2D and p300 [RNA-seq]

Project description:We identified DBC1/CCAR2 target genes using RNA-seq analysis in colon cancer cells.

2022-08-17 | GSE179462 | GEO

DBC1 is a positive regulator of enhancer epigenomic writers KMT2D and p300 [HCT116 ChIP-seq]

Project description:Genome-wide maps of H3K4me3 and H3K27ac in HCT116 WT and DBC1 KO cells

2022-08-17 | GSE201362 | GEO

DBC1 is a positive regulator of enhancer epigenomic writers KMT2D and p300 [HCT116 RNA-seq]

Project description:We identified DBC1/CCAR2 target genes using RNA-seq analysis in colon cancer cells.

2022-08-17 | GSE201363 | GEO

DBC1 is a positive regulator of enhancer epigenomic writers KMT2D and p300

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-08-17 | GSE179463 | GEO

Effect of DBC1/CCAR2 knockout on global gene expression in SW480 cells

Project description:Deleted in breast cancer (DBC1; also known as CCAR2) is a coactivator for nuclear receptors (NRs) and other transcription factors as well as a negative regulator of epigenetic modifiers such as deacetylases SIRT1 and HDAC3. We performed genome-wide gene expression analysis in wild-type and DBC1 knockout SW480 cells to investigate global gene expression changes induced by DBC1 knockout. Total RNAs were isolated from SW480 wild-type and DBC1 knockout cells using the RNeasy mini kit (Qiagen). The integrity of RNA was analyzed using an Agilent 2100 Bioanalyzer. Three independent biological replicates were assayed for each sample. The microarrays were performed following the Affymetrix standard protocol.

2015-12-31 | E-GEOD-65841 | biostudies-arrayexpress

Effect of DBC1/CCAR2 knockout on global gene expression in SW480 cells

2015-12-31 | GSE65841 | GEO

Gene expression analysis of DBC1 KO B cells

Project description:DBC1 KO B cells were either unstimulated, activated with anti-IgM, anti-CD40 of LPS for 4 hours. Genes differentially expressed in DBC1 KO B cells were compared to WT B cells. RNA was collected from unstimulated for stimulated B cells, and gene expression between WT and DBC1 KO B cells were compared

2014-09-04 | E-GEOD-61029 | biostudies-arrayexpress

Gene expression analysis of DBC1 KO B cells

Project description:DBC1 KO B cells were either unstimulated, activated with anti-IgM, anti-CD40 of LPS for 4 hours. Genes differentially expressed in DBC1 KO B cells were compared to WT B cells.

2014-09-04 | GSE61029 | GEO

Effect of DBC1/CCAR2 depletion on global gene expression in MDA-MB-231 cells

Project description:Deleted in breast cancer (DBC1; also known as CCAR2) is a coactivator for nuclear receptors (NRs) as well as a negative regulator of epigenetic modifiers such as deacetylases SIRT1 and HDAC3. We performed genome-wide gene expression analysis in control (shNS) and DBC1-depleted (shDBC1) MDA-MD-231 cells to investigate global gene expression changes induced by depletion of DBC1

2015-01-31 | GSE54707 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data