Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Saccharomyces cerevisiae stress responses to HMF and furfural

ABSTRACT: The inhibitors hydroxymethylfurfural (HMF) and furfural were added to the feed-medium of carbon-limited anaerobic chemostat cultures. Samples were taken for transcriptome analysis at steady-state from cultures with inhibitors and without inhibitors.

ORGANISM(S): Schizosaccharomyces pombe Saccharomyces cerevisiae

PROVIDER: GSE41659 | GEO | 2012/10/18

SECONDARY ACCESSION(S): PRJNA177843

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Saccharomyces cerevisiae stress responses to HMF and furfural

Project description:The inhibitors hydroxymethylfurfural (HMF) and furfural were added to the feed-medium of carbon-limited anaerobic chemostat cultures. Samples were taken for transcriptome analysis at steady-state from cultures with inhibitors and without inhibitors. Three biological replicates from each condition (inhibitors, no inhibitors) were analyzed.

2012-10-18 | E-GEOD-41659 | biostudies-arrayexpress

Saccharomyces cerevisiae stress responses to HMF and furfural (xylose and glucose) Oct

Project description:HMF and furfural were pulse added to xylose-utilizing Saccharomyces cerevisiae during either the glucose consumption phase or the xylose consumption phase. Transcriptome samples were collected before and one hour after pulsing of inhibitors.

2013-11-25 | GSE50182 | GEO

Saccharomyces cerevisiae stress responses to HMF and furfural (xylose and glucose) Oct

2013-11-25 | E-GEOD-50182 | biostudies-arrayexpress

Late lag phase Inhibitor tolerant NRRL Y-50049 vs WT Y-12632 against furfural and HMF challenge

2015-04-16 | GSE50492 | GEO

Late lag phase Inhibitor tolerant NRRL Y-50049 vs WT Y-12632 against furfural and HMF challenge

Project description:Adapted tolerant yeast strain Y-50049 is able to in situ detoxify furfural and HMF while the wild type control Y-12632 repressed to loss function under challenges of 20 mM each of furfural and HMF A time course study during the lag phase with cells harvested at 18, 24, 28, and 42 h after 20 mM furfural and 20 mM HMF treatment

2015-04-16 | E-GEOD-50492 | biostudies-arrayexpress

Adapted Y-50049 vs. Wild type Y-12632 in response to furfural-HMF challenge

Project description:Transcriptional profiling of adapted tolerant industrial yeast Saccharomyces cerevisiae NRRL Y-50049 compared with its parental wild type NRRL Y-12632 in response to challenge of furfural and HMF each at 20 mM. Y-50049 is able to detoxify toxic furan aldehydes in situ while produce ethanol. Under the same conditions, the wild type Y-12632 was repressed and unable to grow and function.

2020-12-31 | GSE131713 | GEO

The gene transcription of the efficient biodetoxification filamentous fungus Amorphotheca resinae ZN1 against the model lignocellulosic inhibitors

Project description:Furans (furfural and 5-hydroxymethylfurfural (HMF)), phenolic aldehydes (4-hydroxybenzaldehyde, syringaldehyde, and vanillin), and weak acids (acetic acid and formic acid) are the main degradation products of lignocellulose pretreatment process and seriously inhibit the cellullas enzyme activity and the fermentation process.

2022-07-21 | GSE208427 | GEO

RNA expression for ethanologenic Escherichia coli strain LY180 in the absence and presence of 15 mM furfural for 15 min

Project description:The data explore the transcriptional response of strain LY180 to 15 mM furfural under anaerobic fermentation conditions. The expression differences of oxidoreductase in LY180 are described. Total RNA was prepared from cultures of LY180 immediately before and 15 min after addition of furfural to 15 mM. The NimbleGen TI83333 chip measures expression of 4,237 genes, with 5 replicates, and 18 probes average per gene.

2012-01-10 | E-GEOD-34956 | biostudies-arrayexpress

RNA expression for ethanologenic E coli strains LY180, EMFR9 and EMFR35 in the absence and presence of 5mM and 15 mM furfural for 15 min

Project description:The data explore the transcriptional response of strains LY180 and EMFR9 to 5 mM furfural under anaerobic fermentation condition The data explore the transcriptional response of strains LY180 and EMFR35 to 15 mM furfural under anaerobic fermentation condition The expression differences of polyamine transporters in LY180 vs EMFR9 and EMFR35 are further described in RD Geddes,X Wang, LP Yomano, EN Miller, H Zheng, KT Shanmugam, and LO Ingram. 2013. Selected Polyamines and Polyamine Transporters Increase Furfural Tolerance (in preparation for submission to Appl Env Microbiol) Total RNA was prepared from cultures of LY180, EMFR9 and EMFR35 immediately before and 15 min after addition of furfural (5mM and 15 mM). The Nimblegen TI83333 chip measures expression of 4,237 genes, with 5 replicates, and 18 probes average per gene. The complete dataset comprising 8 samples is linked below as a supplementary file.

2013-04-29 | E-GEOD-46442 | biostudies-arrayexpress

Adapted Y-50049 vs. Wild type Y-12632 in response to furfural-HMF challenge

Project description:Adapted Y-50049 vs. Wild type Y-12632 in response to furfural-HMF challenge

| PRJNA544492 | ENA