Transcriptomics

Dataset Information

0

Differentiation of human fetal multipotential neural progenitor cells to astrocytes reveals susceptibility factors for JC Virus


ABSTRACT: Viral infections of the CNS are of increasing concern, especially among immunocompromised populations. Rodent models are often inappropriate for studies of CNS infection, as many viruses, including JC Virus (JCV) and HIV, cannot replicate in rodent cells. Consequently, human fetal brain-derived multipotential CNS progenitor cells (NPCs) that can be differentiated into neurons, oligodendrocytes, or astrocytes, have served as a model for CNS studies. NPCs can be non-productively infected by JCV, while infection of progenitor-derived astrocytes (PDAs) is robust. We profiled cellular gene expression at multiple times during differentiation of NPCs to PDAs. Several activated transcription factors show commonality between cells of the brain in which JCV replicates and lymphocytes in which JCV is likely latent. Bioinformatic analysis determined transcription factors that may influence the favorable transcriptional environment for JCV in PDAs. This study attempts to provide a framework for understanding the functional transcriptional profile necessary for productive JCV infection.

ORGANISM(S): Homo sapiens

PROVIDER: GSE43794 | GEO | 2013/04/09

SECONDARY ACCESSION(S): PRJNA187988

REPOSITORIES: GEO

Similar Datasets

2013-04-09 | E-GEOD-43794 | biostudies-arrayexpress
2008-10-20 | E-GEOD-10796 | biostudies-arrayexpress
2016-01-04 | E-GEOD-66597 | biostudies-arrayexpress
2024-02-14 | PXD047238 | Pride
2016-12-01 | GSE89476 | GEO
2016-07-24 | E-GEOD-77988 | biostudies-arrayexpress
2014-09-01 | E-GEOD-57534 | biostudies-arrayexpress
2016-01-04 | GSE66597 | GEO
2022-12-19 | GSE217507 | GEO
2008-07-31 | GSE10796 | GEO